Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D15
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.68 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   0.90 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   1.6  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   8.4  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 241 ALTWRLRQLSIIFLLSFYYLIF-MGNRHIKRYNIYSIYTFFINLRVFTLLEELLHY 77
           ALTW L    + F    +  +F MGN  +  Y++ S+  FF+ +++F L    L Y
Sbjct: 546 ALTWPLLLGPLRFFYEQHLQVFFMGNPFVW-YSVISLVAFFVIVQIFCLARWNLGY 600


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -2

Query: 276 SRTSQVLI*SL--EH*PGVYASFPLFSYCLSIISFLWVIDILRDTI--FIQFTLF 124
           SR  Q+++ S   E  P +Y+   L    L  ISF W + +  DT+   I F +F
Sbjct: 632 SRADQLVLKSFVKESLPEIYSHLELLGVDLDAISFHWFLSVYTDTLPTNISFRIF 686


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 208  IFLLSFYYLIFMGNRHIKRYNIYSIYTFFI 119
            +FLLSFY LI+   +    +N+  +Y F++
Sbjct: 1077 LFLLSFYSLIYGAEKPYLIHNVVGLYFFWL 1106


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 211  IIFLLSFYYLIFMGNRHIKRYNIYSIYTFFI 119
            I+   ++   +F G  +I+ Y IYS+  FFI
Sbjct: 1997 ILAATAYQLTLFTGTSNIQTYEIYSVCAFFI 2027


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -2

Query: 210 LFSYCLSIISFLWVIDILRDTIFIQFT 130
           L +Y LS++ ++W IDI+ +TIFI ++
Sbjct: 121 LKAYRLSVL-YVWAIDIVFETIFIVYS 146


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 216 FPLFSYCLSIISFLWVID 163
           FP FSYCL + +FL V +
Sbjct: 395 FPSFSYCLELQNFLPVFN 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,661
Number of Sequences: 5004
Number of extensions: 49227
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)