Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D15
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99282-2|CAB16533.1|  613|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z83129-12|CAB05645.1|  613|Caenorhabditis elegans Hypothetical p...    29   3.3  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    28   5.8  

>Z99282-2|CAB16533.1|  613|Caenorhabditis elegans Hypothetical
           protein W06G6.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -1

Query: 211 IIFLLSFYYLIFMGNRHIKRYNIYSIYTFF 122
           I+  ++ YY + +G+R ++ +NI+ +Y ++
Sbjct: 501 IVHWMALYYFLNVGDRPLQFFNIWQVYCYY 530


>Z83129-12|CAB05645.1|  613|Caenorhabditis elegans Hypothetical
           protein W06G6.1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -1

Query: 211 IIFLLSFYYLIFMGNRHIKRYNIYSIYTFF 122
           I+  ++ YY + +G+R ++ +NI+ +Y ++
Sbjct: 501 IVHWMALYYFLNVGDRPLQFFNIWQVYCYY 530


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 434 K*NINLSSIGVYPISCW*CSRTSR-QWVRVQI 526
           K N  ++ +G++P+S   CSR +R QW RV++
Sbjct: 212 KINKLMTDLGLFPVSDIICSRLNRSQWQRVKV 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,632
Number of Sequences: 27780
Number of extensions: 261521
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)