Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D14
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.017
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 187 EVTRIKKKLQIQITELEFSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLD 366
           E+ R K +  IQ  + +  L+V  +T++      KK S  L ++      + +QLQ+T  
Sbjct: 136 ELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQRLIQQLQITQS 195

Query: 367 QYGVAQ 384
           QY + Q
Sbjct: 196 QYLLQQ 201


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 494 RVCASSYDCSTIRLARRAC 438
           R C  +  CS +R+ R  C
Sbjct: 53  RPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 494 RVCASSYDCSTIRLARRAC 438
           R C  +  CS +R+ R  C
Sbjct: 102 RPCTKNQQCSILRINRNRC 120


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 272 SMLVLLATSSENSNSVIWICSFFLMRV 192
           + LV  +   E   S IW C FF M +
Sbjct: 359 AFLVYPSAVLELPGSSIWSCLFFFMLI 385


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 272 SMLVLLATSSENSNSVIWICSFFLMRV 192
           + LV  +   E   S IW C FF M +
Sbjct: 412 AFLVYPSAVLELPGSSIWSCLFFFMLI 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.126    0.315 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,484
Number of Sequences: 438
Number of extensions: 2074
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)