Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D13
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   350   7e-99
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   350   7e-99
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  350 bits (860), Expect = 7e-99
 Identities = 160/192 (83%), Positives = 171/192 (89%)
 Frame = +1

Query: 10  NFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGK 189
           NFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLAADVGK
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 190 GDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKN 369
             G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK 
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209

Query: 370 TPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGG 549
           TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG
Sbjct: 210 TPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269

Query: 550 AAFFKGAFSNVL 585
            AFFKGAFSN+L
Sbjct: 270 NAFFKGAFSNIL 281



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
 Frame = +1

Query: 199 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 372
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 373 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 540
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 541 EGGAAFFKG 567
           +G    ++G
Sbjct: 170 DGITGLYRG 178



 Score = 29.9 bits (64), Expect = 0.019
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 391 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFK 564
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 565 GAFSNVL 585
           G  +NV+
Sbjct: 75  GNLANVI 81


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  350 bits (860), Expect = 7e-99
 Identities = 160/192 (83%), Positives = 171/192 (89%)
 Frame = +1

Query: 10  NFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGK 189
           NFAFKDKYKQVFLGGVDKNTQF RYF            TSLCFVYPLDFARTRLAADVGK
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 190 GDGQREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKN 369
             G+REFTGLGNC++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK 
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209

Query: 370 TPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGG 549
           TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEGG
Sbjct: 210 TPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269

Query: 550 AAFFKGAFSNVL 585
            AFFKGAFSN+L
Sbjct: 270 NAFFKGAFSNIL 281



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
 Frame = +1

Query: 199 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKNT 372
           ++ + G+ +C  +I K  G    +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 373 PIVISWAIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKT 540
             +  +         AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 541 EGGAAFFKG 567
           +G    ++G
Sbjct: 170 DGITGLYRG 178



 Score = 29.9 bits (64), Expect = 0.019
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 391 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGGAAFFK 564
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 565 GAFSNVL 585
           G  +NV+
Sbjct: 75  GNLANVI 81


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 372 PHRHQLGHRANRHHSRRYH 428
           PH H +GH  +  H+  +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 366 EHPHRHQLGHRANRHHSRRYHLVSIRHGS*AYDDAVRPCQERHSLQEHH 512
           EHPH+HQ  + A     ++    S++  S    D   P   R  +  HH
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQ--SVQQQSQQAGDPCDPSLLRQGVPGHH 65


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 442 DTVRRRMMMQSGRAKSDILYKNTI 513
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 243 EDLADAVTETGELALPITLANIGGETC 163
           E + D V   GE+A  ++  +  GE C
Sbjct: 498 EGIVDIVMANGEVATSLSDGSYFGEIC 524


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 243 EDLADAVTETGELALPITLANIGGETC 163
           E + D V   GE+A  ++  +  GE C
Sbjct: 466 EGIVDIVMANGEVATSLSDGSYFGEIC 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,784
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)