Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D12
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   149   1e-36
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   146   9e-36
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    28   4.8  
04_04_0157 + 23165638-23166633                                         28   4.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  149 bits (362), Expect = 1e-36
 Identities = 71/129 (55%), Positives = 87/129 (67%)
 Frame = +3

Query: 57  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 236
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 237 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 416
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 417 PRLLIVIGP 443
           PRLLI+  P
Sbjct: 123 PRLLILTDP 131



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +1

Query: 439 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 588
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG L W
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  146 bits (355), Expect = 9e-36
 Identities = 72/127 (56%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +3

Query: 69  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 242
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 243 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 422
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 423 LLIVIGP 443
           LLI+  P
Sbjct: 125 LLILTDP 131



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +1

Query: 439 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIG-LMW 588
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG L W
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFW 180


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 12  RSQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 173
           R++ HY +  VT      +G + L+ L +ED+ K L+A  H   E +   MET+
Sbjct: 248 RNKGHYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 232 FSHVRRRLITCVPSPRRL 179
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,846
Number of Sequences: 37544
Number of extensions: 317595
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)