Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D11
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 61 8e-10
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 60 2e-09
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 40 0.002
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873... 31 0.78
02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253 30 1.8
04_04_0569 + 26293891-26294931 29 3.2
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 4.2
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 29 4.2
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 7.3
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 7.3
11_03_0122 - 10313934-10314069,10315889-10316319 27 9.7
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 27 9.7
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 27 9.7
>03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 60.9 bits (141), Expect = 8e-10
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Frame = +1
Query: 7 GDIRVGLIGSCTNSSYEDMGRCASIV-KEALNHGLKSK--IPFNVTPGSEQIRATIERDG 177
GD+ + I SCTN+S ++ A++V K+A GL+ K I ++ PGS ++ +++ G
Sbjct: 528 GDVVIAAITSCTNTSNPNVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVKKYLDKSG 587
Query: 178 IAQTLRDFGGTVLANACGPCIGQWDRRDVKKG---EKNTIVT----SYNRNFTGRNDANP 336
+ + L G ++ C CIG D N IV S NRNF GR A
Sbjct: 588 LQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVLSGNRNFEGRVHALT 647
Query: 337 ATHCFVTSPELVTALSIAGRLDFNPLSDEL-TGTDGKKFKLSD--PFADEL 480
+ ++ SP LV A ++AG ++ + + + DGK+ D P +E+
Sbjct: 648 RAN-YLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIWPSTEEI 697
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 59.7 bits (138), Expect = 2e-09
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Frame = +1
Query: 7 GDIRVGLIGSCTNSSYEDMGRCASIV-KEALNHGLKSK--IPFNVTPGSEQIRATIERDG 177
G + + I SCTN+S + A++V K+A GL+ K + ++ PGS + + + G
Sbjct: 435 GSVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWVKTSLAPGSGVVTKYLLQSG 494
Query: 178 IAQTLRDFGGTVLANACGPCIGQWDRRDVKKG---EKNTIVT----SYNRNFTGRNDANP 336
+ + L G V+ C CIG D +N +V S NRNF GR +P
Sbjct: 495 LQEYLNKQGFHVVGYGCTTCIGNSGDLDESVSAAISENDVVAAAVLSGNRNFEGR--VHP 552
Query: 337 ATHC-FVTSPELVTALSIAGRLDFNPLSDEL-TGTDGKKFKLSD--PFADEL 480
T ++ SP LV A ++AG +D + + + G DGK+ D P +E+
Sbjct: 553 LTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKEVFFRDIWPSTEEI 604
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Frame = +1
Query: 28 IGSCTNSSYEDMGRCASIVKEALNHGLKSKIPFNVTPGSEQIRATIERDGI--------A 183
IGSCT ED A + L G K K+P + P ++++ I + +
Sbjct: 349 IGSCTGGKTEDFFAAAKVF---LASGKKVKVPTFLVPATQKVWMDIYSIPVPGAGGKTCS 405
Query: 184 QTLRDFG-GTVLANACGPCIGQWDRRDVKKGEKNTIVTSYNRNFTGRNDANPATHCFVTS 360
Q + G T + +CG C+G + E V++ NRNF GR + ++ S
Sbjct: 406 QIFEEAGCDTPASPSCGACLGGPRDTYARMNEPMVCVSTTNRNFPGRM-GHKEGQIYLAS 464
Query: 361 PELVTALSIAG 393
P A ++ G
Sbjct: 465 PFTAAASALTG 475
>06_03_0084 -
16386962-16387033,16387124-16387175,16387252-16387313,
16387509-16387543,16387637-16387679,16388610-16388692,
16388829-16388917,16390415-16390681,16391370-16391446,
16391546-16391677,16391802-16391870,16392464-16392529,
16392603-16392773,16392848-16392916,16393005-16393086,
16393175-16393219,16393535-16393659,16394271-16394525,
16396561-16396722
Length = 651
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 428 PVLMGRNSSYQIRSRTNCPRKVSTPVRIRTNTPPQTAARYKWTCHRNRTG 577
P + + S++ S + P V +P R N P + K TC+RNR+G
Sbjct: 473 PSNLVNSGSHKFLSGSLIPEHVLSPYRNVGNDPARNECHQKNTCNRNRSG 522
>02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253
Length = 231
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 400 DFNPLSDELTGTDGKKFKLSDPFADELPSKGFDPGQDTYEHPPADGSKVQVDVSPKSD 573
D +P D G D SDP D PS DP D + P+D + V D S +D
Sbjct: 144 DDSPADDHADGPD-PAVDPSDPAVDADPSDPADPADDADDSDPSDPA-VDADPSDPAD 199
>04_04_0569 + 26293891-26294931
Length = 346
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 230 PQAFANTVPPKSLRVWAIPSLSMVARICSEPGVTLNGIFDFRPWFKASLTILAQRPMS 57
P+ FA VP SL A S V +C +P L ++DF F+A Q PMS
Sbjct: 144 PRLFATHVPFTSLPSAAAASGCKVVYVCRDPKDNLISMWDFANKFRAR---EGQEPMS 198
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 404 STRCRMN*PVLMGRNSSYQIRSRTNCPRKVSTPVRIRTNTPPQTAAR 544
S RCR + P + R + IR R+ +P+R R+ +PP R
Sbjct: 279 SPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSPSPPPRRLR 325
>02_04_0624 +
24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 17 ALASSALARIPHTKTWVAAPVLLKRL 94
A++S LA+ H K W ++P LLK+L
Sbjct: 554 AISSMLLAKCLHQKLWESSPFLLKQL 579
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -2
Query: 608 SHLSKGANSCSLSDFGDTSTCTLLPSAGGCSYVS*PGSKPFEGSSSANGSDNLNFFPS-- 435
S G+NS S+ G +S SA S GS GSSS++GS +++ S
Sbjct: 238 SSSGSGSNSNSIGGSGSSSGAGSGSSASSGYGGSSSGSMSGSGSSSSSGSTGMSYGSSGA 297
Query: 434 VPVSSSDNGLKSRRPAIDRAVTSSG 360
S S +G S ++ A + +G
Sbjct: 298 GSFSGSSSGSNSNAGSMSGANSGAG 322
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 441 EEIQVIRSVRGRTALERFR--PRSGYVRTPPRRRQQGTSGRVTEIGQAATVGALRQV 605
E + + G A++R + PR+G TP + GTSG +T+ +T A+ V
Sbjct: 400 EVLSQVYDAYGAVAVQRAQLFPRNGADVTPTKSSASGTSGTITKPVAESTAVAVEHV 456
>11_03_0122 - 10313934-10314069,10315889-10316319
Length = 188
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 601 CRRAPTVAACPISVTRPLVPCCRLRGGVRTYPDR 500
CR P + P+ +P VP CR TYPD+
Sbjct: 132 CRPPPPLLVLPVRYWQPAVPRCR----STTYPDK 161
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 82 VKEALNHGLKSKIP--FNVTPGSEQIRATIERDGIAQTLRD 198
V NH K +P F+ TP + I+ I ++QTL D
Sbjct: 598 VTPVFNHNEKYVVPDSFSPTPAKQAIKKLISTKNLSQTLED 638
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 472 DELPSKGFDPGQDTYEHPPADGSKVQVDVSPKSDRL 579
D + FD DT+E P G + +DVS +D +
Sbjct: 164 DRFVAVEFDTYDDTFERPRPAGDHIGIDVSSVADSI 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,135
Number of Sequences: 37544
Number of extensions: 454186
Number of successful extensions: 1519
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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