Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D11
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.8  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +1

Query: 109 KSKIPFNVTPGSEQIRATIERDGI 180
           +S +PF++   S+ +   ++R+G+
Sbjct: 296 RSFVPFSIERSSQSVAEVMDRNGV 319


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 491 PFEGSSSANGSDNLNFFPSVPVSSSDNGLKSRRPAIDRAVTSSGLVTKQCVAGFAS 324
           P    S  +GS N N  P+V V S  + +       ++    SG   K   AG+ +
Sbjct: 456 PIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY--KDSFAGWTA 509


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 491 PFEGSSSANGSDNLNFFPSVPVSSSDNGLKSRRPAIDRAVTSSGLVTKQCVAGFAS 324
           P    S  +GS N N  P+V V S  + +       ++    SG   K   AG+ +
Sbjct: 456 PIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY--KDSFAGWTA 509


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -2

Query: 491 PFEGSSSANGSDNLNFFPSVPVSSSDNGLKSRRPAIDRAVTSSGLVTKQCVAGFAS 324
           P    S  +GS N N  P+V V S  + +       ++    SG   K   AG+ +
Sbjct: 456 PIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY--KDSFAGWTA 509


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 442 KKFKLSDPFADELPS 486
           K FK++ PF + LPS
Sbjct: 59  KTFKMNVPFEETLPS 73


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 442 KKFKLSDPFADELPS 486
           K FK++ PF + LPS
Sbjct: 61  KTFKMNVPFEETLPS 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,931
Number of Sequences: 438
Number of extensions: 3813
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)