Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D10
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 202 2e-53
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 202 2e-53
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 180 8e-47
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 164 6e-42
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 158 5e-40
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 153 1e-38
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 77 2e-15
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 76 3e-15
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 71 1e-13
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 70 2e-13
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 65 5e-12
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 65 6e-12
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 59 4e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 58 7e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 56 3e-09
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 53 2e-08
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 50 2e-07
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 32 0.042
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.69
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 3.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 4.8
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 4.8
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 4.8
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 4.8
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.4
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 202 bits (494), Expect = 2e-53
Identities = 89/109 (81%), Positives = 100/109 (91%)
Frame = +1
Query: 172 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 351
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 352 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 498
EDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI 113
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 202 bits (493), Expect = 2e-53
Identities = 87/109 (79%), Positives = 100/109 (91%)
Frame = +1
Query: 172 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 351
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 352 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 498
EDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPI 113
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 180 bits (439), Expect = 8e-47
Identities = 81/122 (66%), Positives = 95/122 (77%), Gaps = 2/122 (1%)
Frame = +1
Query: 139 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DG 312
S+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI +
Sbjct: 2 SAFKKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNS 61
Query: 313 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNV 492
K +ELALWDTAGQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRT 121
Query: 493 PI 498
PI
Sbjct: 122 PI 123
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 164 bits (399), Expect = 6e-42
Identities = 72/108 (66%), Positives = 86/108 (79%)
Frame = +1
Query: 172 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 351
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 352 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVP 495
E+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP
Sbjct: 67 EEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVP 114
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 158 bits (383), Expect = 5e-40
Identities = 72/119 (60%), Positives = 88/119 (73%)
Frame = +1
Query: 142 SSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV 321
SS I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +
Sbjct: 2 SSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSI 61
Query: 322 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 498
EL+LWDTAGQE+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V +
Sbjct: 62 ELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKL 120
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 153 bits (371), Expect = 1e-38
Identities = 67/105 (63%), Positives = 79/105 (75%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 360
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 361 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVP 495
DRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVP 109
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 76.6 bits (180), Expect = 2e-15
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 357
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHF 480
+ + Y I++ + V DS N+ ++W E+ +
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRY 109
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 76.2 bits (179), Expect = 3e-15
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 357
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNV 492
+ + Y IL+ + V S +N+ ++ +H NV
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENV 115
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 70.5 bits (165), Expect = 1e-13
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 357
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE 468
+ L Y D ++ ++V++ S +++ E W E
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQE 105
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 70.1 bits (164), Expect = 2e-13
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 139 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-G 312
+S+ + + I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 313 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP 486
V+L +WDTAGQE Y L P+ Y + + ++ + + SLE + W E++ P
Sbjct: 62 TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 65.3 bits (152), Expect = 5e-12
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +1
Query: 169 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 342
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 343 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK 474
AGQE + L P D+ V ++ + + + +S N EKW +V+
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVR 110
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 64.9 bits (151), Expect = 6e-12
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 360
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
Query: 361 DRLRPLSYPDTDVILMCFSVDSPDSLENI 447
+R + L+ +++ S S + I
Sbjct: 70 SAMREQYMRTGEGFLLVYNITSRSSFDEI 98
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 58.8 bits (136), Expect = 4e-10
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 357
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE 468
+ L Y D ++ + V++ S E + + W E
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDE 105
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 58.0 bits (134), Expect = 7e-10
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 357
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 498
LR Y ++ F V S + +N+P W V+ C N+PI
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPI 116
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 56.0 bits (129), Expect = 3e-09
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 357
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPI 498
Y + Y L+ + + S +N+ +W E++ H N+ I
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVI 118
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 357
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 358 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHF 480
+ + P+ D IL F + +L +I E W + + F
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGF 111
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 53.2 bits (122), Expect = 2e-08
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = +1
Query: 181 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 345
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 346 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 489
GQE + + Y ++ + V + DS E + W +++ P+
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPS 117
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 50.0 bits (114), Expect = 2e-07
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +1
Query: 163 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 339
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 340 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENI 447
TAGQ++Y L ++ +S+ S S E +
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMV 96
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 32.3 bits (70), Expect = 0.042
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 190 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 369
+VG +CGKT LL F + + TV V +E Q L L G+ D D L
Sbjct: 426 VVGSKSCGKTALLSSFINNNTNRLTPNTV----VNSVEFQSTQRYLVL-SEIGETDLDIL 480
Query: 370 -RPLSYPDTDVILMCFSVDSPDSLENI 447
P S D++ + + +P+S I
Sbjct: 481 AEPKSLEACDILCLLYDSSNPNSFSFI 507
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.3 bits (60), Expect = 0.69
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +3
Query: 264 RADSV*ELRSRHRGGWETGGTSAVGYGRPRGLRQAAAAVIPGH*CDLDVLLGGLARLARE 443
R+ + + S +R + G TS GY P R + A+ P D+D GL++
Sbjct: 131 RSQELPRITSSNREIYLNGQTSDGGYAAPAISRAESTAIQPSEPHDVDTSKNGLSKKQHS 190
Query: 444 HPREVDTGGETFLSERAD 497
+ G + + E D
Sbjct: 191 EAQPEVQGNDDEVEEEDD 208
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 268 PTVFENYVADIEVDGKQVELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSV 420
P +FE+ I+ G V+L LW AG+ E DR+ P + LM F +
Sbjct: 1162 PFIFEDVERAIDPSGTNVDL-LWRAAGKFELLDRILPKLFLTGHKTLMFFQM 1212
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 163 MAAIRKK--LVIVGDGACGKTCLL 228
+ I KK ++VGD A GKTC+L
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCIL 1886
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 370 AACRSPLGRPYPTALVPPV 314
A+ R L R YPT LVPP+
Sbjct: 108 ASLRVQLSRLYPTCLVPPL 126
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 251 N*SLLNTIRRHVLPHAPSPTITNFLRIAAIGPELAEEEQ 135
N L N + +H + P T+ FLR PE +EQ
Sbjct: 355 NDDLQNLLSKHRISRIPMSTVNAFLRAEDSIPESFSDEQ 393
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 313 SHPPRCRLRSSQTLSARTLPG 251
S PPR +L SS++ + R LPG
Sbjct: 436 SAPPRSKLISSKSEAGRALPG 456
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 163 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 306
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 230 IRRHVLPHAPSPTITNFLRIAAIG 159
I H+LP+ TITNF R+ G
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPG 211
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 6.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -2
Query: 76 RFWLISAKYWLIDT 35
+ WL S+++WL+DT
Sbjct: 106 KLWLWSSRFWLLDT 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,638
Number of Sequences: 5004
Number of extensions: 40711
Number of successful extensions: 147
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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