Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D06
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 165 2e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 6e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 75 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 7e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 1e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 7e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 9e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.049
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.60
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 2.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 3.2
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.3
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.6
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 24 7.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 7.5
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 7.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 9.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 165 bits (401), Expect = 2e-42
Identities = 73/79 (92%), Positives = 77/79 (97%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 283
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 284 RGILTLKYPIEHGIVTNWD 340
RGILTLKYPIEHGIV NWD
Sbjct: 62 RGILTLKYPIEHGIVNNWD 80
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 6e-21
Identities = 40/72 (55%), Positives = 53/72 (73%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 301
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 302 KYPIEHGIVTNW 337
+ PIE GI+ NW
Sbjct: 72 QRPIERGIIQNW 83
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 74.9 bits (176), Expect = 3e-15
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 283
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 284 RGILTLKYPIEHGIVTNWD 340
R +L +KYP+E+GI+ +++
Sbjct: 62 RSLLQVKYPMENGIIRDFE 80
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.2 bits (107), Expect = 7e-07
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 250
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 251 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWD 340
D ++G++A K +L YPI HG + NWD
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWD 103
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 1e-06
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 301
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 302 -KYPIEHGIVTNWD 340
+ P E +++NWD
Sbjct: 83 ARSPFERNVISNWD 96
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.0 bits (99), Expect = 7e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 286
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 287 GILTLKYPIEHGIVTNWD 340
G + +K I +G V NWD
Sbjct: 62 G-MEIKNAIRNGWVENWD 78
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.6 bits (98), Expect = 9e-06
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 286
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 287 GI--LTLKYPIEHGIVTNWD 340
I + +K +GI+ +W+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWE 81
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.049
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 167 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 310
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.60
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 264 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 103
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 114 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 206
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 227 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 313
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 4.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 134 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 286
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAG 169
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 154 FAHSGPIVYDQRGNFLV 104
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 210 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 109
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 322 AVFDGVFECEDTPLALCLI--TYVGVLLTHADH 230
+V D +FEC D P+ + +G+ H +H
Sbjct: 298 SVLDALFECFDVPVVQYMYQENIIGICNEHFEH 330
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 280 QEGYPHTQIPHRTRHRH 330
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 336 QLVTMPCSMGYLSVRIPLLLCASSPT*ESF 247
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 204 TIEGNTARGASSPAKPALHIPDPLSTT 124
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 153 LHIPDPLSTTNAATSSSHI 97
+H PD LS N++ S +H+
Sbjct: 369 IHYPDDLSYFNSSRSKAHV 387
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 205 HDRGKYGAGSVVSRETGFAHSGPIVYDQRGN 113
+ RG Y GSV RET G V R N
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,072
Number of Sequences: 5004
Number of extensions: 24645
Number of successful extensions: 79
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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