Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D06
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 176 3e-45
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 176 3e-45
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 176 3e-45
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 176 3e-45
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 176 3e-45
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 176 3e-45
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 176 3e-45
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 176 3e-45
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 175 7e-45
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 175 7e-45
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 175 7e-45
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 173 2e-44
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 170 3e-43
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 138 1e-33
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 89 6e-19
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 84 3e-17
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 72 1e-13
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 58 2e-09
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 36 0.006
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 36 0.006
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 34 0.031
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.041
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 30 0.50
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 29 1.2
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 29 1.2
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 29 1.2
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 29 1.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 1.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 24 3.1
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 3.5
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 8.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 8.1
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 26 8.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 8.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 8.1
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 26 8.1
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 26 8.1
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 26 8.1
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 8.1
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 176 bits (429), Expect = 3e-45
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 175 bits (426), Expect = 7e-45
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 175 bits (426), Expect = 7e-45
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 175 bits (426), Expect = 7e-45
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 173 bits (422), Expect = 2e-44
Identities = 77/81 (95%), Positives = 81/81 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 277
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 SKRGILTLKYPIEHGIVTNWD 340
SKRGILTLKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 170 bits (413), Expect = 3e-43
Identities = 77/79 (97%), Positives = 79/79 (100%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 283
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 284 RGILTLKYPIEHGIVTNWD 340
RGILTLKYPIEHGIVTNWD
Sbjct: 62 RGILTLKYPIEHGIVTNWD 80
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 138 bits (333), Expect = 1e-33
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +2
Query: 152 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 331
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 332 NWD 340
NWD
Sbjct: 65 NWD 67
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 89.4 bits (212), Expect = 6e-19
Identities = 36/72 (50%), Positives = 53/72 (73%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 301
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 302 KYPIEHGIVTNW 337
+YP+EHGIV NW
Sbjct: 71 EYPMEHGIVNNW 82
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 83.8 bits (198), Expect = 3e-17
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 230 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD 340
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD 37
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 71.7 bits (168), Expect = 1e-13
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 295
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 296 TLKYPIEHGIVTNWD 340
+ YP+++GIV NWD
Sbjct: 69 DINYPMDNGIVRNWD 83
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 241
M ++ A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 242 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWD 340
D ++GDEA S T+KYPI HGIV +WD
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWD 94
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 113 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 292
+ ++ DNG K G ++PR V P+ + + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 293 LTLKYPIEHGIVTNWD 340
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 113 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 292
+ ++ DNG K G ++PR V P+ + + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 293 LTLKYPIEHGIVTNWD 340
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 243 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPL 133
P T TP RGRP I + ++ P P PDPL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.041
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 205 GATSSPGRHGRHGSEG 252
G + +PGRHGRHG+ G
Sbjct: 109 GPSGTPGRHGRHGAPG 124
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 216 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 106
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 641 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 216 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 106
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 216 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 106
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 216 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 106
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -3
Query: 327 TMPCSMGYLSVRIPLLLCASSPT*ESF*PMPTMTPW*RGRPTIEGN-TARGASSPAKPAL 151
T+ S PL++ +SS S T+TP +G PT N S+P P
Sbjct: 451 TLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTPKS 510
Query: 150 HIPDPLSTTNAATSSS 103
+ STT A +++S
Sbjct: 511 TVTASPSTTGATSTAS 526
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 152 KAGFAGDDAPRAVFPSIVGRPRHQG 226
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Frame = +1
Query: 217 SPGRHGRHGSEGLLRR**GT------EQEGYPHTQIPHRTRHRH 330
+P HG HG G+ G G H PH H H
Sbjct: 599 APAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEH 642
Score = 21.4 bits (43), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 205 GATSSPGRHGRHG 243
G+ SP HG HG
Sbjct: 553 GSHHSPAHHGHHG 565
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 205 GATSSPGRHGRHGS 246
G PGRHGRHGS
Sbjct: 358 GPPHCPGRHGRHGS 371
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 217 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHQL 336
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 217 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHQL 336
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
C12C8.3b protein.
Length = 1143
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 304 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 128
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 127 DQRGNFLV 104
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
C12C8.3a protein.
Length = 1147
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 304 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 128
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 127 DQRGNFLV 104
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GRPTIEGNTARGASSPAKPALHIP 142
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GRPTIEGNTARGASSPAKPALHIP 142
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 243 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 103
P+PT T PT T G +P+ +P P +T + T ++
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTT 538
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GRPTIEGNTARGASSPAKPALHIP 142
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 213 GRPTIEGNTARGASSPAKPALHIP 142
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 304 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 128
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 127 DQRGNFLV 104
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 304 FECEDTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 128
F+ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 127 DQRGNFLV 104
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 124 QRGNFLVAHCELVF 83
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 124 QRGNFLVAHCELVF 83
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,419
Number of Sequences: 27780
Number of extensions: 151429
Number of successful extensions: 570
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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