Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D05
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.14
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.19
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 28 0.33
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.43
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 0.75
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 0.75
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 1.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 1.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 3.0
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 4.0
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 24 5.3
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 24 5.3
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 24 5.3
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 24 5.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 23 9.2
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 23 9.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 23 9.2
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 23 9.2
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.5 bits (63), Expect = 0.14
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 98 RKTKRNRWRTKGE-SDPERNQSRGVYRAKEENATHRPERSVHW 223
R NR+R S P+R S G YR + N RP R H+
Sbjct: 217 RDRDSNRYRNSYRPSRPQREHSPGNYRKERYNVDSRPRRERHF 259
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.19
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 152 NQSRGVYRAKEENATHRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEM 319
+Q V+R +A ER++H + +M ++K + ++KE Q E E+
Sbjct: 371 SQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENEL 426
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.3 bits (60), Expect = 0.33
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 86 EPPARKTKRNRWRT--KGESD 142
EPP ++T RNRW+ KG SD
Sbjct: 498 EPPPKETDRNRWKAWLKGYSD 518
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.43
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Frame = +2
Query: 20 EEPMSADAEEQKAASAKSWRRAEPPARKTKRNRWRTKGESDPERNQSRGVYRAKEENATH 199
E A+ + + A + R AE A++ + + + E +R R EENA
Sbjct: 544 EAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 603
Query: 200 RPERSV--HWPRTTEMTVDLKIKMTADQEQKETIADQEETE 316
E + + K K A+++ K ++ + E
Sbjct: 604 EAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKRE 644
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 27.1 bits (57), Expect = 0.75
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 15 GTRSRCQRMPKNR-RQHQPRAGAGRSPRRERQRGIAGEPKGNQTPKEIRAVASI 173
G ++ Q + + + R H+ GR RE E + + PK+ RAV+++
Sbjct: 21 GLKASSQELKRQKTRDHKSFENLGRDQSRELAVSDFNEKQSTEPPKDTRAVSAL 74
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 0.75
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 185 ENATHRPERSVH--WPRTTEMTVDLKIKMTADQEQKETIADQEETEMTVD 328
E ++HRPERS P +V + AD E +T D ++TE T+D
Sbjct: 1460 ETSSHRPERSSEKKSPSPVFTSVKQTAENDADNEDDKTDMD-DQTEETLD 1508
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 1.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 113 NRWRTKGESDPERNQSRGVYRAKEENATHRPERS 214
+RW K E PER+Q R E++A HR ERS
Sbjct: 13 SRW--KRERSPERSQRRSQSPPGEQSAYHR-ERS 43
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +2
Query: 20 EEPMSADAEEQKAASAKSWRRAEPPARKTKRNRWRTKGESDPERNQSRGVYRAKEENATH 199
+E ++E + ++++ PA+K + + RTK ES+ E S K++
Sbjct: 153 DEESEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEG 212
Query: 200 RP 205
P
Sbjct: 213 TP 214
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 3.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 8 RIRHEEPMSADAEEQKAASAKSWRRAEPPAR 100
R+R E + EEQ AA AK W R AR
Sbjct: 96 RLRKECISQTNHEEQLAAYAKYWTRFTTSAR 126
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 206 ERSVHWPRTTEMTVDLKIKMTADQEQKETIADQE 307
ERS PRT ++ D ++T ++ + D+E
Sbjct: 17 ERSALTPRTAKILADAGFQITIERSSQRAFKDKE 50
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +2
Query: 203 PERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEM 319
PE + W T+ + A+ E KET A E+
Sbjct: 59 PEDDIDWGDMENDTISTDVNKPAEPESKETSAPAAAVEI 97
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 44 EEQKAASAKSWRRAEPPARKTKRNRWRTKGESDPERNQSR 163
+E A S K + PARKTK R G + ++ R
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKR 92
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 5.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 25 ADVSGCRRTEGSISQELAPGGAPGEKDKEESL--ENQRGIRPRKKS-EPWRLSCEGRKR 192
A++S R+ ++ + G PG +KEE+L +G+ P K P R S R R
Sbjct: 507 ANLSAVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMKMPLTPRRASTGPRPR 565
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 24.2 bits (50), Expect = 5.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 220 MHAPLWPVRRV 188
+H+P WPVRR+
Sbjct: 109 IHSPKWPVRRI 119
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 21 RSRCQRMPKNRRQHQPRAGAGRS 89
+ R +R P NR+ PR+ G+S
Sbjct: 400 KRRKRRQPSNRKTSVPRSPGGKS 422
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 236 EMTVDLKIKMTADQEQKETIADQEE 310
E VD+ K +++E+ E + +QEE
Sbjct: 415 ETVVDMPTKQVSNKERLEILREQEE 439
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 23.4 bits (48), Expect = 9.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 179 KEENATHRPE--RSVHWPRTTEMTVDLKIKMTADQEQKETIADQE-ETE 316
+ +N++ R + S++ ++ TVD +I TA Q +K + D+E ETE
Sbjct: 292 QHQNSSGRTDSFHSLNTETPSKSTVDDQILSTAAQPKKSSDTDKEMETE 340
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 97 EKDKEESLENQRGIRPRKKSE 159
EKD+ ES +N+R +PR +E
Sbjct: 101 EKDRLESKKNERQGKPRSYNE 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.128 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,261
Number of Sequences: 5004
Number of extensions: 18395
Number of successful extensions: 74
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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