Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D02
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 244 4e-65
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 243 9e-65
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 241 2e-64
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 130 7e-31
07_03_1357 - 25982861-25983068,25983354-25983361 61 5e-10
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.27
02_05_1008 - 33461225-33462334 29 2.5
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.3
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.4
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 4.4
01_05_0433 - 22094784-22095659 28 5.8
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 7.7
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 244 bits (597), Expect = 4e-65
Identities = 119/185 (64%), Positives = 142/185 (76%)
Frame = +3
Query: 3 TRDELAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLAR 182
TRD AK+ + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+R
Sbjct: 215 TRDNTAKL-----NLAYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSR 269
Query: 183 IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQT 362
IR AR LLTL+EK+P+R+FEG A + Q KLDYVL L +E+FL RRLQT
Sbjct: 270 IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQT 329
Query: 363 QVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGR 542
VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGR
Sbjct: 330 LVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGR 389
Query: 543 VKRKN 557
VKRKN
Sbjct: 390 VKRKN 394
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 243 bits (594), Expect = 9e-65
Identities = 114/169 (67%), Positives = 136/169 (80%)
Frame = +3
Query: 51 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 230
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 231 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 410
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 411 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 557
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKN 178
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 241 bits (591), Expect = 2e-64
Identities = 114/167 (68%), Positives = 135/167 (80%)
Frame = +3
Query: 57 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 236
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 237 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 416
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 417 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 557
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKN 201
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 130 bits (314), Expect = 7e-31
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 51 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 230
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 231 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 410
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 411 LIRQRHI 431
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +3
Query: 432 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 557
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 51 FSKTYVTPRRPFEKARLDQELKIIGEYG 134
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 348 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 473
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 291 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 470
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 471 VRLDSGKHIDFSLKSPFGGGR 533
+ +DSG+ + + FG GR
Sbjct: 217 L-IDSGRRVKI---ADFGVGR 233
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 330 IEDFLERRLQTQVFKAGLAKSIHHAR 407
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 362 SGVQGWSCEVNPSCPHLDQTEAY 430
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 105 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 227
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>01_05_0433 - 22094784-22095659
Length = 291
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 538 PGRPPPNGDFREKSMCLPESRRTMNEGMFTTC 443
PGR PP +R K M P RR G C
Sbjct: 48 PGRVPPPPMYRPKPMQAPARRRRSRRGWCCAC 79
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 84 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 218
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,977
Number of Sequences: 37544
Number of extensions: 335812
Number of successful extensions: 985
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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