Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D01
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.7  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   2.2  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   8.9  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/28 (28%), Positives = 21/28 (75%)
 Frame = +1

Query: 397 YVDGAHEVLSYLHSNSINFVKYAQVTFV 480
           Y+DG  ++++ L S+++++VK++  T +
Sbjct: 396 YIDGYSKIMATLFSSAVSYVKFSDSTML 423


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -3

Query: 362 HLPARPAYCSRGSPAYVCAPFRRVSAVEQYPRVSYY*WNIFIALYITSSGIY-FYIYI 192
           H  A P Y +RGS  YV     +           Y+ W +     +TS  ++ FY+ +
Sbjct: 65  HRAAAPKYDARGSLLYVGQDLLQEGVTSYMVDYMYFSWILIFLAALTSVKVFAFYLLV 122


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 390 GYVC*RCSRSALLST*QLNKLCQICSS 470
           G+V  RCS + LL + +  K C +C+S
Sbjct: 613 GHVWRRCSVTMLLLSQKAAKYCAVCNS 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,848
Number of Sequences: 5004
Number of extensions: 47322
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)