Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D01
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0147 + 12277012-12277207,12277401-12277495,12277608-122779...    28   5.1  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    27   6.8  
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108           27   6.8  
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595...    27   6.8  
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148...    27   8.9  

>06_02_0147 +
           12277012-12277207,12277401-12277495,12277608-12277949,
           12278074-12278223,12278311-12278832,12279082-12279290,
           12279412-12279544,12279814-12279954
          Length = 595

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 VNVIVVSTNLMWVCMLTVLTKCSP 427
           + V V+   L W+ +L VLT CSP
Sbjct: 144 LTVFVLELALQWLTLLAVLTGCSP 167


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 379 SGHNDNIYPLGRLIAAEGRPRTSVLPSGGFQ 287
           SG ND    + +LI  E +P TS LP G  Q
Sbjct: 39  SGENDERQQILQLIIEEIQPETSELPDGRIQ 69


>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
          Length = 510

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 116 VPHNQYNKLGIIFDYLHFLLPRWPSCITVRLS 21
           VP +  + +G +  Y+HF +P  P     RLS
Sbjct: 10  VPEDVESSIGTVLSYIHFAIPDAPVSSHARLS 41


>03_02_0640 -
           10058828-10058971,10059066-10059201,10059512-10059590,
           10060861-10060927,10061014-10061100,10061474-10061567,
           10061663-10061749,10062267-10062328,10062485-10062584,
           10062729-10062827,10062969-10063033,10063617-10063694,
           10063787-10063873,10064383-10064466,10064860-10064955,
           10065045-10065122,10066049-10066139,10066224-10066315,
           10066433-10066560,10067421-10067495,10067670-10067850
          Length = 669

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 168 KNQKFFSTYFFYNYLYISTTQ 106
           +N ++F   FFY+YLY S  Q
Sbjct: 229 QNLRYFHCLFFYSYLYFSLEQ 249


>06_03_0293 +
           19212963-19212965,19213900-19214235,19214658-19214870,
           19216134-19216408,19216504-19216615,19217181-19217417,
           19217445-19217462
          Length = 397

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 398 YIPTSN*WTQR*HLPARPAYCSRGSPAYVCAPFRRVSAVEQYPRVSYY*WNIFIALYITS 219
           Y+P  N  +Q     A+  YC       VC   + +S+  Q  + S Y W    AL+++ 
Sbjct: 247 YVPALNNVSQSTDFLAKLFYC-------VCWGLQNLSSRGQNLKTSTYAWENLFALFVSI 299

Query: 218 SGIYFY 201
           SG+  +
Sbjct: 300 SGLVLF 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,505
Number of Sequences: 37544
Number of extensions: 269206
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)