Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C23
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   140   7e-34
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   108   3e-24
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   108   3e-24
Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  140 bits (338), Expect = 7e-34
 Identities = 68/137 (49%), Positives = 95/137 (69%)
 Frame = +3

Query: 39  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 218
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 219 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 398
                            FV++I++I REKANG++V++GIHPSK  I KLK++KDR+ +++
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 399 RRASGRLAALGKDKGKY 449
           R+A+GR    G  KGK+
Sbjct: 120 RKAAGRSRVTGILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  108 bits (259), Expect = 3e-24
 Identities = 53/103 (51%), Positives = 71/103 (68%)
 Frame = +3

Query: 39  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 218
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 219 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSK 347
                            FV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  108 bits (259), Expect = 3e-24
 Identities = 53/103 (51%), Positives = 71/103 (68%)
 Frame = +3

Query: 39  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 218
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 219 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSK 347
                            FV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical
           protein W08G11.4 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 257 HLYYFAHLLAFIMSSYNLHFVVFADWHRFHVELLS*LFGEWC*HKYSSDVRRGTEMPLPV 78
           HL+YF+ +L+   S    H +VF  W      L      + C H       +   +P P 
Sbjct: 568 HLFYFSKMLSVSASPSYTHSLVFCCW--IETILFEIKSIDNCTHTNPRKPAKSHTLPTPP 625

Query: 77  FPSGRRH 57
            P  +RH
Sbjct: 626 QPKNKRH 632


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 56  RDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQ 190
           RD  +KE+  +     FSH   +    T +    + QR +Y NPQ
Sbjct: 353 RDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQ 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,232,236
Number of Sequences: 27780
Number of extensions: 223864
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)