Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C22
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    23   5.6  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    23   5.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   7.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   9.7  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 SIRYIWRTVSVKF 178
           S+RY+W T+  +F
Sbjct: 559 SVRYLWNTIDTEF 571


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 YSAVSVSCIRLSVSGTFGGQY 167
           Y    +SC  ++ +GT+ GQY
Sbjct: 393 YVCNEISCDGITANGTYPGQY 413


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 28  ITCFC*QYQLDSVVSVRPIWADSVSYIRLS 117
           +TC C +  LD VV   P W D   + R+S
Sbjct: 804 VTCACFEPSLDYVVVKIPRW-DLKKFTRVS 832


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 111 PNITDTVSPNGTDTDD 64
           P IT+ VSP  T T+D
Sbjct: 190 PEITNEVSPKFTSTND 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,555
Number of Sequences: 5004
Number of extensions: 10076
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)