Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C22
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    26   3.7  
03_05_0784 + 27678018-27678623,27678762-27678935                       26   4.9  

>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 181 SEFN*YCPPNVPDTDSRIQLTLTAEYN*HCQPKWD 77
           S FN + PP VPD D++I      E     +  +D
Sbjct: 325 SFFNFFSPPQVPDDDAKIDENTAEELQNQMERDYD 359


>03_05_0784 + 27678018-27678623,27678762-27678935
          Length = 259

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   TRVKFSGHYHLFLLTVPVR 59
           T  +  GH HLF L++PV+
Sbjct: 184 TVAEVEGHVHLFFLSIPVK 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,567,891
Number of Sequences: 37544
Number of extensions: 62535
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)