Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C22
         (194 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical...    27   2.4  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    25   9.8  
AF000263-18|AAG00019.1|  152|Caenorhabditis elegans Hypothetical...    25   9.8  
AF000262-1|AAN60528.1|  152|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AC024791-34|AAF60670.2|  440|Caenorhabditis elegans Hypothetical
           protein Y47G6A.25 protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 58  DSVVSVRPIWADSVSYIRLSVSAVFGCQYQVHLADS 165
           ++V ++   W+   + IRL +  + GC+  V +A S
Sbjct: 34  ENVANIASRWSTCCNIIRLHIEQMIGCEVDVAVAKS 69


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 86  GLTVSVIFGCQCQLYSAVSIRYIWRTVSVKFG 181
           GLT  +IF C   L   +S +Y W  V  + G
Sbjct: 278 GLTELIIFNCSQGLSLPLSSQYRWYQVLYQLG 309


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 86  GLTVSVIFGCQCQLYSAVSIRYIWRTVSVKFG 181
           GLT  +IF C   L   +S +Y W  V  + G
Sbjct: 278 GLTELIIFNCSQGLSLPLSSQYRWYQVLYQLG 309


>AF000263-18|AAG00019.1|  152|Caenorhabditis elegans Hypothetical
           protein T08B2.12 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 114 QPNITDTVSPNGTDTDDGI*LVLSAETSDN 25
           +P+++ TV+PN T  DD     L  ETS N
Sbjct: 105 RPSLSSTVAPNVTSVDD-----LLGETSTN 129


>AF000262-1|AAN60528.1|  152|Caenorhabditis elegans Hypothetical
           protein C48E7.7 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 114 QPNITDTVSPNGTDTDDGI*LVLSAETSDN 25
           +P+++ TV+PN T  DD     L  ETS N
Sbjct: 105 RPSLSSTVAPNVTSVDD-----LLGETSTN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,077,336
Number of Sequences: 27780
Number of extensions: 58765
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)