Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C20
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   171   5e-44
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   171   5e-44
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    42   4e-05
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   4.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   4.7  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   8.3  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  171 bits (416), Expect = 5e-44
 Identities = 77/125 (61%), Positives = 103/125 (82%)
 Frame = +3

Query: 33  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 212
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 213 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRS 392
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPR 
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 393 LRAQE 407
           +  ++
Sbjct: 121 MEPKK 125



 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = +1

Query: 391 RCEPKKFGGPGARARYQKSYR 453
           R EPKKFGG GARAR QKSYR
Sbjct: 120 RMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  171 bits (416), Expect = 5e-44
 Identities = 77/125 (61%), Positives = 103/125 (82%)
 Frame = +3

Query: 33  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 212
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 213 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRS 392
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPR 
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 393 LRAQE 407
           +  ++
Sbjct: 121 MEPKK 125



 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = +1

Query: 391 RCEPKKFGGPGARARYQKSYR 453
           R EPKKFGG GARAR QKSYR
Sbjct: 120 RMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)
 Frame = +3

Query: 54  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 233
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 234 GGGHVAQVYAIRQAISKALI 293
           GGG   Q  A+  AISK+LI
Sbjct: 71  GGGPTGQSGAVHAAISKSLI 90


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 118 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 26
           +T+N PCPR  ++ T       P T  +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 256 TCATCPPPFTVTLISTP 206
           T  +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +3

Query: 219 RVTVKGGGHVAQVYAIR--------QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 374
           RV + G G+VAQ  A++        ++IS +      K  +    +EI +I+   ++   
Sbjct: 222 RVAISGSGNVAQYAALKCIQEGAIVKSISDSKGVLIAKTAEGLVPEEIHEIMALKEKRAS 281

Query: 375 VADPRSL 395
           +AD  SL
Sbjct: 282 IADSASL 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,129
Number of Sequences: 5004
Number of extensions: 46192
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)