Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C20
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 172 1e-43
11_01_0155 - 1287003-1287452 172 1e-43
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.006
03_06_0097 - 31632238-31632525,31633386-31633769 38 0.006
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 1.6
11_01_0523 - 4109070-4109984,4110532-4110936 28 4.7
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 4.7
01_03_0227 + 13967966-13968559 28 4.7
02_03_0402 - 18627565-18628137,18628343-18628479,18628513-186286... 27 6.3
>12_01_0152 - 1168928-1169377
Length = 149
Score = 172 bits (418), Expect = 1e-43
Identities = 76/122 (62%), Positives = 99/122 (81%)
Frame = +3
Query: 24 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 203
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 204 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 383
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 384 PR 389
PR
Sbjct: 127 PR 128
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1
Query: 391 RCEPKKFGGPGARARYQKSYR 453
RCEPKKFGG GARAR+QKSYR
Sbjct: 129 RCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 172 bits (418), Expect = 1e-43
Identities = 76/122 (62%), Positives = 99/122 (81%)
Frame = +3
Query: 24 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 203
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 204 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 383
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 384 PR 389
PR
Sbjct: 127 PR 128
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1
Query: 391 RCEPKKFGGPGARARYQKSYR 453
RCEPKKFGG GARAR+QKSYR
Sbjct: 129 RCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.006
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +3
Query: 54 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 233
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 234 GGGHVAQVYAIRQAISKAL 290
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 37.5 bits (83), Expect = 0.006
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 36 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 206
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 207 GVDIRVTVKGGGHVAQVYAIRQAISKALI 293
D+ V V GGG Q AI +++AL+
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALV 181
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 71 NCGSILQTRTWSVACKWTPPRPGRTQTSS 157
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 234 GGGHVAQVYAIRQAISKALIAFY 302
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 117 NGRPLDLVEPRLLQYKLQEPILLL 188
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 405 EIRWSRRPCQIPEILPLISF 464
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>02_03_0402 -
18627565-18628137,18628343-18628479,18628513-18628603,
18629734-18629817
Length = 294
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 312 VDEASKKEIKDILVQYDRSLLVADPRSLRAQEIRWSR 422
V + KKE+++ LVQ D+ + V + ++RW R
Sbjct: 150 VQKKRKKELENALVQLDKQMTVDFLKLNEKSDMRWKR 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,669,274
Number of Sequences: 37544
Number of extensions: 335334
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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