Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C20
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   1.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 255 PVQHVHHLLQSL*YPHQRTFPCLAK 181
           P  H HH  QSL + H R  P L++
Sbjct: 350 PHHHHHHQTQSLQHLHYRQPPTLSE 374


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 281 RDGLSDCINLCNMSTTFYSHSNIHTRE 201
           RD   +CI +CNM         IHT E
Sbjct: 49  RDAYDNCITVCNMENV--DPLGIHTGE 73


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 261 AIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRSLRAQEIR 413
           A ++ +S        K +D   KKEI DIL + D   ++ + + L+  +I+
Sbjct: 549 ANKKGVSLRFYNVVYKLIDNI-KKEIYDILPEVDVEEILGEAKVLQNFDIK 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,105
Number of Sequences: 438
Number of extensions: 3105
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)