Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C18
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    30   1.1  
01_01_1034 + 8181373-8181484,8182810-8183384,8185410-8185468,818...    29   2.0  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    28   3.5  
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597...    28   4.6  
05_02_0131 - 6919143-6920125,6920334-6920529                           28   4.6  
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984...    28   4.6  
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615...    27   6.0  
05_05_0313 - 24026142-24026708                                         27   6.0  

>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 142 GGGKRSPLRQLLDDASSFAEPEAPEHEQLQW 234
           GGG+RSP  QLL    +F   EA  H++ QW
Sbjct: 201 GGGERSPREQLLRTTVNF---EAMAHQKRQW 228


>01_01_1034 +
           8181373-8181484,8182810-8183384,8185410-8185468,
           8185785-8185878
          Length = 279

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 450 GSFRAHAGYIPPDYVRREEIQVAHSRNPEQITTHTDILRALPR 322
           G +R+H  Y+    +R +EI VA +R P      T  +  LPR
Sbjct: 16  GQWRSHEFYVGSPRLRSQEIFVAVARRPVLAVVATGGISGLPR 58


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 396 EIQVAHSRNPEQITTHTDILRALPREQ*HCSI 301
           E+ V H + P+ +  +T+ +   P+EQ HC++
Sbjct: 490 EVPVRHKKAPDALEMNTNSVVFSPKEQTHCNL 521


>06_03_1468 -
           30354724-30354945,30359326-30359497,30359587-30359770,
           30359865-30360111,30360817-30362052
          Length = 686

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 402 REEIQVAHSRNPEQITTHTDILRAL 328
           RE ++ A+SR  + ITTH DIL  L
Sbjct: 633 RELVEKAYSRATQIITTHIDILHKL 657


>05_02_0131 - 6919143-6920125,6920334-6920529
          Length = 392

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 103 PTRLVAVTR-LCHTGGGKRSPLRQLLDDASSFAEPEAPEHEQLQW 234
           PT+L A    L   G    + +  +LDD     E E  EHEQ +W
Sbjct: 326 PTKLAASRHVLSEYGNMSGTTIAFVLDDLRRRQEKEGDEHEQPEW 370


>02_02_0401 +
           9847398-9847463,9848916-9849019,9849873-9849876,
           9849968-9851230
          Length = 478

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 191 RSPSQKRLSTSSCSGRLSRIRGVPTGKPLAATESSRAILQCYCSRGRARSMS 346
           R P +++L++   SG L +  G+P    ++ +  S  + QC  S    + +S
Sbjct: 89  RGPMKRKLNSYLASGLLKKSPGLPENLSVSQSSDSNILQQCDVSSDENKLLS 140


>12_02_0964 -
           24860373-24860381,24860427-24860768,24861436-24861583,
           24862070-24862089
          Length = 172

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 142 GGGKRSPLRQLLDDASSFAEPEAPEH 219
           GGG R   R++L  AS  A P  P H
Sbjct: 97  GGGSRGTARRILRSASGSATPLPPHH 122


>05_05_0313 - 24026142-24026708
          Length = 188

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 405 RREEIQVAHSRNPEQITTHTDILRALPRE 319
           +R EI+V +  NP ++TT  +  RAL +E
Sbjct: 44  KRREIKVVYIANPMRVTTSEEGFRALVQE 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,074
Number of Sequences: 37544
Number of extensions: 307154
Number of successful extensions: 998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)