Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C18
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-2|AAN73874.2|  411|Caenorhabditis elegans Hypothetical ...    66   1e-11
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical...    28   4.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    27   5.5  

>AF040642-2|AAN73874.2|  411|Caenorhabditis elegans Hypothetical
           protein C50D2.9 protein.
          Length = 411

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 29/61 (47%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
 Frame = +1

Query: 310 VLLFPGQGSQYVGMGRDLLRIPTVRDLYLLASDVVGWDVARVCTEGPTEELARR--CQTA 483
           VLLFPGQG+Q+VGMG+ ++ IP  R ++  AS+V+G+D+ +VC +GP ++L +   CQ A
Sbjct: 95  VLLFPGQGAQFVGMGQKVMDIPAARRVFDEASEVLGYDMLKVCQDGPKQKLEQTLYCQPA 154

Query: 484 V 486
           +
Sbjct: 155 I 155


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 157 SPLRQLLDDASSFAEPEAPEHEQLQWATQPYSXXXXXXXXXXXXVEPRDTTVLLFPG 327
           SP+  L  DASS ++ E  + E+ +  T+P +            V P  T V  FPG
Sbjct: 298 SPIDTLSTDASSASDEEMIDVEEQESCTRPVAEVTRPNVIQNPVVRPVATKVNNFPG 354


>AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical
           protein Y41D4B.6 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +1

Query: 295 PRDTTVLLFPGQGSQYVGMGRDLLRIPTVRDLYLLASDVVGWDVARVCTEGPTEELARRC 474
           P DTTV L  G GS Y+ +    L+  T R+L     +++G + + V T    EEL  + 
Sbjct: 33  PLDTTVSLSRGNGSAYLKL-PIALKANTTRELGRFPIEMLG-NYSLVITGDKVEELGIKS 90

Query: 475 QT 480
            T
Sbjct: 91  ST 92


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 310  VLLFPGQGSQYVGMGRDLL 366
            VL+  GQGSQY  MGR L+
Sbjct: 3724 VLMLTGQGSQYPMMGRQLV 3742


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 113 WSQ*PGSVTLVAENEVRCGSY*MTRARSPSQKRLSTSSCSGRLS 244
           W++   + TL+  NE  C  Y     R  SQ  L+  SC+ R +
Sbjct: 568 WTKQNSNTTLIKRNETTCDMY----MRCRSQMHLAVDSCAWRFA 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,600
Number of Sequences: 27780
Number of extensions: 218347
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)