Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C17
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.2  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   5.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   5.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.5  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   7.5  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   7.5  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   9.9  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 533 SPITGAFRGALMDKTPSEDNFDVTAFSSIPSGS 435
           +PIT +   A M   P+ D+ D+    ++PS S
Sbjct: 252 TPITNSTHSAQMSNLPTHDSMDIDMGGAVPSTS 284


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 503 LMDKTPSEDNFDVTAFSSIPSGSLYRLVKLLEIKPCSSCRSSCLASIIRKPSAVFTDISS 324
           L   TPS  +  +++ SSI SGS   L   +   P SS  S+  +S+I   S + +  SS
Sbjct: 625 LSSPTPSTSSLMISS-SSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSS 683


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 148 FGLGLTPQDYLTIIAVPQANRDYYRPWRNLQTVAQDVGSTIN 273
           F +G +    +T I V   +  +   W N QT+   +G++++
Sbjct: 107 FSIGHSTVVLITCIVVAATSSKFADRWNNFQTIGGIIGTSVS 148


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -2

Query: 464 TAFSSIPSGSLYRLVKLLEIKPCSSCRSSCLASIIRKPSAVFTDISSGAKC*TSKLTWNW 285
           +A SSI +  +     ++     SS  SS ++S     S++   I S A   TSK   N 
Sbjct: 354 SAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSL-ASIISNAYIATSKSGLNS 412

Query: 284 SLSSLIVDPTSWAT 243
            +S+L+  PTS +T
Sbjct: 413 GVSTLLASPTSSST 426


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 169  QDYLTIIAVPQANRDYYRPWRNLQTVAQDVGSTINEDKDQFQVNLDVQHFAPED 330
            Q  L + AVP A  +++ P+  +Q  A         D D +  + D +    ED
Sbjct: 1609 QPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQPSGHDSDNWSQHGDEEEEDSED 1662


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 410 EIKPCSSCRSSCLASIIRKPSAVFTDISSGAKC*TSKLTWNWSLS 276
           ++KPC+     CL       +A++   S       S    NW LS
Sbjct: 369 QLKPCAIIIMECLVDAPNHHNAIYRKYSENRMKRVSAFAHNWVLS 413


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 130 RLPDQHFGLGLTPQDYLTIIAVPQANRDYYRPW 228
           R PDQ F     P   L    VP   +  Y PW
Sbjct: 96  RQPDQKFSFSGAPLSDLQDAVVPCKKQTGYHPW 128


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 361 IIEAKHEERQDEHGLISRSFTRRYKLPDGIEENAVTSKLSSDGVLSISA-PLKAPVIGER 537
           ++EA     +DE+GLI+    + + L   +E        S   VLS    P K    G  
Sbjct: 62  LVEAPGSHLRDEYGLITLKSNKPHILISNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHA 121

Query: 538 IVPII 552
            V ++
Sbjct: 122 YVSLV 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,208
Number of Sequences: 5004
Number of extensions: 41164
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)