Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C17
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 34 0.066
01_01_0227 + 1933247-1933699 32 0.35
11_02_0041 - 7669692-7670312 30 1.4
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 28 4.4
12_02_0914 + 24248993-24249047,24249995-24250122,24250523-242506... 28 5.8
04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611 28 5.8
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 28 5.8
02_05_0972 + 33198035-33198277,33198366-33198641 27 7.6
02_02_0637 - 12491706-12492575,12492580-12492657 27 7.6
>03_02_0478 + 8775892-8776377
Length = 161
Score = 34.3 bits (75), Expect = 0.066
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEDISVKTADGFLII-----EAKHEERQDEHGLISRS---FTRRYKLPDGIEEN 459
DV E++ V+ DG ++ + EE+ D+ + RS F RR++LPD +
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 460 AVTSKLSSDGVLSISAP 510
+ + + +GVL+++ P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>01_01_0227 + 1933247-1933699
Length = 150
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 364 IEAKHEERQDEHGLISRSFTRRYKLPDGIEENAVTSKLSSDGVLSISAP 510
++ K++ER S F RR++LP G + V++ + +GVL+++ P
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVP 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 418 FTRRYKLPDGIEENAVTSKLSSDGVLSISAPLKAP 522
F RR+++P G + V ++L DGVL+++ P K P
Sbjct: 142 FWRRFRMPPGADVGRVAARL-DDGVLTVTVP-KVP 174
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 GSTINEDKDQFQVN-LDVQHFAPEDISVKTADGFLIIEAK 375
G + + +F N + +Q F E ISV DGFL I AK
Sbjct: 407 GELVKWNATRFGTNCMFLQSFLKEAISVHAVDGFLYIHAK 446
>12_02_0914 +
24248993-24249047,24249995-24250122,24250523-24250633,
24250714-24250836,24251183-24251269
Length = 167
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 316 FAPEDISVKTADGFLIIEAKHEERQDEHGLISRSFTRRYKLPDGIEENAVT 468
FAP+ IS KT D L+ E + DEHGL+ + R Y +G+E+ T
Sbjct: 58 FAPQ-IS-KTLDS-LLDENGQDSESDEHGLVKPRYGRYY--DEGLEKTRQT 103
>04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611
Length = 380
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 361 IIEAKHEERQDEHGLISRSFTRRYK 435
I+ A E RQ+E G R F+RRY+
Sbjct: 208 IVRAVDEARQNEAGAFRRLFSRRYR 232
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/95 (17%), Positives = 44/95 (46%)
Frame = +1
Query: 109 YDQPRRRRLPDQHFGLGLTPQDYLTIIAVPQANRDYYRPWRNLQTVAQDVGSTINEDKDQ 288
++ R+R P++ + +T Q T+ A+P + + + T Q G T ++D
Sbjct: 107 FEFERKRNRPER-YDRNVTAQ---TLKAIPLITKIRHERHKKHITERQKQGKTKQRERDA 162
Query: 289 FQVNLDVQHFAPEDISVKTADGFLIIEAKHEERQD 393
++ D+Q +D + T ++++ ++ ++
Sbjct: 163 KELEQDIQMLPKKDTMLSTQKTKVVVKVSQQQTEE 197
>02_05_0972 + 33198035-33198277,33198366-33198641
Length = 172
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Frame = +1
Query: 304 DVQHFAPED--ISVKTADGFLIIEAKHEERQDEHGLIS-------RSFTRRYKLPDGIEE 456
D+Q ED + +K+++G + K EE + E I R+F R+++LP+ +
Sbjct: 79 DIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADT 138
Query: 457 NAVTSKLSSDGVLSISAPLKAP 522
++++ +GVL+++ + P
Sbjct: 139 GGISAR-CENGVLTVTVKKRPP 159
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = -2
Query: 551 IIGTILSPITGAFRGALMDKTPSEDNFDVTAFSSIPSGSLYRLVKLLEIKPCSSCRSSCL 372
++GT+LS + A RG + D+ A +P+ +L L LL CS+CR+ C
Sbjct: 43 LLGTLLSRLPDACRGVAL--------LDLLA-PDLPTSALLILYNLLL---CSTCRAGCS 90
Query: 371 AS 366
AS
Sbjct: 91 AS 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,280
Number of Sequences: 37544
Number of extensions: 257243
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -