Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C17
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 508 VHLWIKPHLKIILTSPHSLLY 446
           +H WI P L ++     +L+Y
Sbjct: 539 IHTWIHPWLPLLRNRLDTLIY 559


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 468 RHRILFYTVRKLIP 427
           R + LFYTV  +IP
Sbjct: 237 RRKTLFYTVNLIIP 250


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 468 RHRILFYTVRKLIP 427
           R + LFYTV  +IP
Sbjct: 233 RRKTLFYTVNLIIP 246


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 468 RHRILFYTVRKLIPSCETS 412
           R + LFYTV  ++P    S
Sbjct: 232 RRKTLFYTVNLIVPCVSIS 250


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 468 RHRILFYTVRKLIP 427
           R + LFYTV  +IP
Sbjct: 246 RRKTLFYTVNLIIP 259


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 468 RHRILFYTVRKLIP 427
           R + LFYTV  +IP
Sbjct: 241 RRKTLFYTVNIIIP 254


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 468 RHRILFYTVRKLIP 427
           R + LFYTV  +IP
Sbjct: 241 RRKTLFYTVNIIIP 254


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 364 IEAKHEERQDEHGL 405
           +EA  EERQ E+G+
Sbjct: 414 LEAVEEERQREYGI 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,103
Number of Sequences: 438
Number of extensions: 2989
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)