Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C15
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 108 5e-25
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 31 0.100
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.40
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 29 0.70
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.70
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 2.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 2.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.7
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.7
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 108 bits (260), Expect = 5e-25
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +2
Query: 23 FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRL 202
F RYVE GRV LV+ G GKL +VDI+D RALID P S RQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 203 KYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFK-LTSARVKRNR 379
K P A + +V K W + KWA S WA+KL K+ R+Q+ D+DRF + + +R +
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123
Query: 380 ARTAVFKSLK 409
AV K+LK
Sbjct: 124 VNVAVAKALK 133
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 31.5 bits (68), Expect = 0.100
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 181 ELVEANLLPRNTTAGTVNKCACLINDINYANQL 83
E+ E+ LLP + T GTV AC I D + A +L
Sbjct: 951 EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 29 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 115
+ ++PG+VAL++ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.7 bits (61), Expect = 0.70
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK*LGQITELLFSIKQKIKD 599
K+ KAQL+S A++NP A Q S SF P + ++ L +QK+++
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGI----ELVNPLLQRQQKVEE 493
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 29 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 115
+ ++PG+VALV+ G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 353 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 463
T +NR T+ F + A AG+FG+S P +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 5 EEDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 133
++D F +Y+ G++ L +D P K +G + ++ D
Sbjct: 14 QDDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 239 KAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 418
+A + + E+ +++ +KLA +EKR + + K R+++ RA+ A K + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765
Query: 419 ARA 427
A A
Sbjct: 766 AHA 768
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 47 RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS-----GVSRQQIRLNQLHLTKF 196
++ + SDG + K +G++DI+ Q L D + G Q++ + + H+ +F
Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWDTSDNKLGTDGTHVQELPIPESHMERF 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,999
Number of Sequences: 5004
Number of extensions: 43635
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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