Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C14
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    26   2.8  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   3.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    25   4.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    24   8.5  
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    24   8.5  

>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 335 LMTKFYVNGRSSLFFLHTRNNSYIPILS 418
           L+TKFY++  S  FF+ ++     P LS
Sbjct: 9   LLTKFYISANSCAFFVKSQRKWTSPDLS 36


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 356 NGRSSLFFLHTRNNSY 403
           N ++++F +HTRNN Y
Sbjct: 202 NQKTTVFHMHTRNNKY 217


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 395 YFLYEGKTMKISHLHKILS 339
           ++LYE    K+S LHK LS
Sbjct: 308 FYLYEFPNTKVSRLHKCLS 326


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 272 SPMMKTNLYKKNDYYFYRMTFKKLTYGINNFI*I*K*KVCKIFAIIVKSYRVH 114
           SP+ KTN+  + +  +      KL Y ++  +       CK++A  + + ++H
Sbjct: 217 SPVCKTNMEDQEETVYTGGVAAKLDYKMDQMVEYLSIMTCKLYARFLNNAQMH 269


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126 TFNYNRKYFTNFLFLNLYKIINSVSQFFKSHSIEV-IIVFFVKVCFHHRGIK 278
           T + N +  +  +F   +K +  V + F++ + E  ++      CFHH G++
Sbjct: 67  TISINGQIASEEIFNTCWKQVIEVDRRFRTKATEFELLTATAFQCFHHSGVR 118


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 342 VIRHLYLTLISSMTYNEL--SANF*FPYDENKPLQKKRLLLLSN 217
           VI H +  LI      +L  SA+  FP  EN+PL  ++L+ LSN
Sbjct: 462 VIPHYHNKLIDFSQVLQLVFSASEKFPIQENQPL-PEQLMFLSN 504


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 302 VIDDISVRYKCLMTKFYVNGRSSLFFLHTRNNSYIPIL 415
           ++DD+    K +  + +    SSLFF    N S IPIL
Sbjct: 433 IVDDVMYVTKQVFQRAFFTV-SSLFFTRFVNESLIPIL 469


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 63  TKHKTTFLDKIITCTSQMYAI-TFNYNRKYFTNFLFLNLYKI 185
           T+ KT  LDK++   +QM+    FN     F N +  +L  I
Sbjct: 123 TRSKTALLDKVVAEYNQMWMDGPFNTENLAFPNGILFHLADI 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,987
Number of Sequences: 5004
Number of extensions: 33219
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)