Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C14
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    28   3.6  
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448...    27   4.7  
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977...    27   6.2  
01_04_0133 + 16477502-16479475                                         27   6.2  

>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 147 YFTNFLFLNLYKIINSVSQFFKSHSIEVIIVFFVK 251
           +FT   F+ LY II       K+ S   II++F++
Sbjct: 276 WFTFVAFIGLYNIIKHYPPILKAVSPHYIIIYFIR 310


>10_02_0041 +
           4486623-4486855,4487002-4487036,4487132-4487253,
           4487496-4487585,4487711-4487830,4487941-4488024,
           4488123-4488200,4488349-4488474,4488564-4488653,
           4489183-4489218,4489294-4489349,4489569-4489716,
           4489797-4490130,4491249-4491384,4491595-4491636,
           4491725-4491893,4492471-4492554,4492660-4492755
          Length = 692

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 183 IINSVSQFFKSHSIEVIIVFFVKVCFHHRGIKNSQKVHYKSLT 311
           ++ S+  F  SH + V+ + F+ +C+++   KNS KV+  ++T
Sbjct: 588 LLLSIDTFGVSHILPVLSLPFIAICWYNSASKNS-KVNDATVT 629


>09_04_0472 -
           17895285-17896459,17897113-17897271,17897374-17897794,
           17898520-17898552,17898902-17899384
          Length = 756

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 114 MYAITFNYNRKYFTNFLFLNLYKIINSVS 200
           M   TFN+N+ YF +  F + Y  +  VS
Sbjct: 228 METTTFNFNKNYFNSTTFYDTYNGLAKVS 256


>01_04_0133 + 16477502-16479475
          Length = 657

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 225 EVIIVFFVKVCFHHRGIKNSQKVH 296
           EVI+V  VK C  H  +   Q++H
Sbjct: 276 EVILVGLVKACSRHSAVSEGQQLH 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,137,041
Number of Sequences: 37544
Number of extensions: 147756
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)