Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C14
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine r... 31 0.34
U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical pr... 30 0.59
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 28 2.4
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 28 3.2
AF068711-2|AAC17776.1| 414|Caenorhabditis elegans Hypothetical ... 28 3.2
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 28 3.2
Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical pr... 27 5.5
U80842-5|AAK71419.2| 305|Caenorhabditis elegans Serpentine rece... 27 5.5
U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical pr... 26 9.7
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 26 9.7
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 26 9.7
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 26 9.7
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 26 9.7
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 26 9.7
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 26 9.7
AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical ... 26 9.7
AC024799-7|AAW88388.1| 295|Caenorhabditis elegans Hypothetical ... 26 9.7
>AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine
receptor, class z protein79 protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 102 CTSQMYAITFNYNRKYFTNFLFLNLYKIINSVSQFFKSHSIEVIIVFFVK 251
CT+ + ITF + F F F N K + +F H +V +V FVK
Sbjct: 115 CTAAFHFITFLLAAQRFLIFFFPNTEKHVAVFQKFLFKHIWKVYLVIFVK 164
>U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical
protein F36H5.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 162 LFLNLYKIINSVSQFFKSHSIEVIIVFFVKVCF-----HHRGIKNSQKVHYKSL 308
+FLN+ ++NS+ + +I++ +V + +CF + +++ +HY+SL
Sbjct: 130 VFLNILFLVNSIVGLYSRIAIDISLVILLIICFFGYKAFNLAYESAAPIHYRSL 183
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 135 YNRKYFTNFLFLNLYKIINSVSQFFKSHSIEVIIVFFVKVC 257
Y RK T LFL + ++ S F S + +I+ FF+ +C
Sbjct: 139 YGRKKIT-LLFLCMMLFFSTSSSFSSSIEVFIIVRFFIGIC 178
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/96 (20%), Positives = 37/96 (38%)
Frame = +3
Query: 36 EHLNIDKFNTKHKTTFLDKIITCTSQMYAITFNYNRKYFTNFLFLNLYKIINSVSQFFKS 215
+HLN D F+T T +TC S + N +N + + + V+ F
Sbjct: 404 KHLNEDTFHTFLSHTSFTMFLTCFSTIVPFFINIT----SNVIVFRCFGLFAGVTVIFNY 459
Query: 216 HSIEVIIVFFVKVCFHHRGIKNSQKVHYKSLTISVL 323
+ + F+ + + H K Y+S+ +L
Sbjct: 460 FMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLL 495
>AF068711-2|AAC17776.1| 414|Caenorhabditis elegans Hypothetical
protein R09A1.2 protein.
Length = 414
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +3
Query: 105 TSQMYAITFNY---NRKYFTNFLFLNLY----KIINSVSQFFKSHSIEVIIVFFVKVCFH 263
T+ Y F+Y N+K F NFLF+N Y K VS+ +H I++ + H
Sbjct: 3 TAINYCFFFDYQLFNQKIFGNFLFVNEYSGEMKDSCKVSKSTTNHRIDMNKSLDITAAIH 62
Query: 264 H 266
H
Sbjct: 63 H 63
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/96 (20%), Positives = 37/96 (38%)
Frame = +3
Query: 36 EHLNIDKFNTKHKTTFLDKIITCTSQMYAITFNYNRKYFTNFLFLNLYKIINSVSQFFKS 215
+HLN D F+T T +TC S + N +N + + + V+ F
Sbjct: 404 KHLNEDTFHTFLSHTSFTMFLTCFSTIVPFFINIT----SNVIVFRCFGLFAGVTVIFNY 459
Query: 216 HSIEVIIVFFVKVCFHHRGIKNSQKVHYKSLTISVL 323
+ + F+ + + H K Y+S+ +L
Sbjct: 460 FMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLL 495
>Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical
protein R05H5.6 protein.
Length = 337
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +3
Query: 138 NRKYFTNFLFLNLYKIINSVSQFFKSHSIEVIIVFFVKVCFHHRGIKNSQKVHYKSLTIS 317
N Y + + Y ++ S+ F + +I+F ++VC + IK V++ + IS
Sbjct: 9 NISYDPLYRYSQFYTLLTSIFSVFP---LLYLIIFKLRVCTFNDNIKFLYIVYFTQILIS 65
Query: 318 VLD 326
VL+
Sbjct: 66 VLN 68
>U80842-5|AAK71419.2| 305|Caenorhabditis elegans Serpentine
receptor, class i protein50 protein.
Length = 305
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 196 TELIILYKFKNKKFVKYLRL*LKVIAYICDVHVIILSKNVVL 71
T L+I++K KY L ++I + D HV IL + V L
Sbjct: 29 TMLLIIFKSDKLGNFKYFMLAFQIINTVSDFHVTILMQAVPL 70
>U40954-8|AAM69083.2| 471|Caenorhabditis elegans Hypothetical
protein ZK813.5 protein.
Length = 471
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 397 VISCMKEKQ*RSPIYIKFCHKTFISNTDI 311
+++ + K R+ IY+ +CH +F++ D+
Sbjct: 50 IVAVLITKSFRTTIYLMYCHLSFVNIIDL 78
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 467 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 505
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 467 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 505
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 525 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 563
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 525 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 563
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 571 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 609
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 FLDKIITCT-SQMYAITFNYNRKYFTNFLFLNLYKIINS 194
F ++I C S + + F Y R YFT F L ++I +
Sbjct: 497 FKFELILCLGSSLNCVKFFYERNYFTYFQTFRLLRLIKA 535
>AC024799-8|AAW88387.1| 297|Caenorhabditis elegans Hypothetical
protein Y49C4A.2 protein.
Length = 297
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 127 VIAYICDVHVIILSKNVVLCFVLNLSIFKCSFAGIYF 17
+I C + VIIL+ N++ FVLN S K YF
Sbjct: 10 LIGLACAIVVIILNLNLICKFVLNNSKRKNDMHLFYF 46
>AC024799-7|AAW88388.1| 295|Caenorhabditis elegans Hypothetical
protein Y49C4A.3 protein.
Length = 295
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 127 VIAYICDVHVIILSKNVVLCFVLNLSIFKCSFAGIYF 17
+I C + VIIL+ N+V F LN S K YF
Sbjct: 10 LIGLACAIIVIILNSNLVCKFALNKSKRKNDMHLFYF 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,158
Number of Sequences: 27780
Number of extensions: 178326
Number of successful extensions: 494
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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