Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C13
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    28   1.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   4.5  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   5.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   5.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.8  

>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 290 KRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERVLETLSSI--SLYWASVRQGLKGYPSM 117
           KR  S+    W+SF   ++     LSS ++P  +L + S I  S YWA   +     P  
Sbjct: 17  KRLRSTTKSTWLSFLKSIATFSGDLSSLTAPSFILSSTSLIEYSAYWAEHPELFISLPRG 76

Query: 116 ERPQRTRVETT 84
           E P   ++  T
Sbjct: 77  ETPLERQLLVT 87


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 130 PFNPCLTEAQYKEMED--KVSSTLSGLEGELKGTFYPLTGMSKET 258
           P  P L   Q +  +D  K +S +     E+K  FY LTG+  +T
Sbjct: 41  PEAPLLDNEQRQSAQDFIKDNSEIVVSTSEIKNLFYELTGLDPDT 85


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 337 WPTGRGIYHNENKTFLVWCNEEDHLRLISMQMGGDLKEVY 456
           WP    ++  + KT L W  E   L  + + +GG   + Y
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWY 234


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -1

Query: 302 SPSLKRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERVLETLSSISLYWASVRQGLKGYP 123
           SP  KR   +I    V FD+P    ++  S+ SSPE+ L T +S S + +  ++ L   P
Sbjct: 67  SPLSKRN-PTIKQNRVRFDLPDD--ELSRSNVSSPEKTLLTSASTSTFDSLKKELLPELP 123

Query: 122 SM 117
           S+
Sbjct: 124 SL 125


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 406 HLRLISMQMGGDLKEVYKRLVTAVNDIEKRIPFS 507
           H +  + Q  GD+ E+ KRL  +V  +E++I  S
Sbjct: 425 HKKSANAQFSGDVAELRKRLFWSVYCMERKIGIS 458


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 61  NLDPAGEFVVSTRVRCGRSMEGYPFNPCLTEAQYKEMEDKV 183
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,237
Number of Sequences: 5004
Number of extensions: 39442
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)