Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C13
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 31 0.65
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 30 1.5
04_04_0916 + 29390813-29391893,29402054-29402652 29 2.0
03_05_0738 + 27267514-27268279,27268373-27268395 29 2.0
07_03_0387 - 17536026-17536636,17536772-17537150 29 2.6
02_03_0100 + 15230199-15231002 29 3.4
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 28 4.6
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 6.0
10_08_0964 + 21906737-21907993 27 8.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 27 8.0
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 27 8.0
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +3
Query: 345 RPRHLPQREQDLPRVVQRGGPPPSHFHADGRRPEGGVQEAR 467
RP+ RE PRV R G H H RP G AR
Sbjct: 426 RPKAASSREDASPRVPTRSGGHGHHHHHHSSRPRSGSDGAR 466
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 360 PQREQDLPRVVQRGGPPPSHFHADGRRPEG-GVQEARDRRQRHREEDPVLAP 512
P+R + P +RG + HAD + EG G DR RHR ED +P
Sbjct: 420 PRRRRRRPGERRRGAAD-AELHADDQVREGQGGSAGGDRGPRHRREDGARSP 470
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 360 PQREQDLPRVVQRGGPPPSHFHADGRRPEGGVQEARDRRQRHR 488
P E+ P+ PP FH R EGG E +DR R+R
Sbjct: 257 PAPERVFPQFPHHPPPPQGLFHPGAGRDEGGKME-KDRGSRNR 298
>03_05_0738 + 27267514-27268279,27268373-27268395
Length = 262
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 399 GGPPPSHFHADGRRPEGGVQEARDRRQRH-REEDPVLAPRQARFPD 533
G PP H HA + P RQRH +E P PR P+
Sbjct: 16 GAPPRDHHHAAKKSPAPSATTTTATRQRHGQEPKPKPKPRARAKPN 61
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 405 PPPSHFHADGRRPEGGVQEARDRR--QRHREEDPVL 506
PP HF GRR G + + RR + HR+ PVL
Sbjct: 276 PPVEHFGGRGRRCSGDPEPSGKRRRGRPHRDSTPVL 311
>02_03_0100 + 15230199-15231002
Length = 267
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 399 GGPPPSHFHADGRRPEGGVQEARDRRQRHREEDPVLAP 512
GG P H + GRR E + RRQR + + P
Sbjct: 183 GGAPSRHVPSSGRRVEAQLSRVSSRRQRRTMKHSIPEP 220
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 396 RGGPPPSHFHADGRRPE 446
RGG PPSH H DG R +
Sbjct: 383 RGGMPPSHNHDDGYRQQ 399
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 116 ERPQRTRVETTNSPAGSRLPRVSTSPQFLAGCLSVF 9
+RP+ +RV T +R+P + ++++G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>10_08_0964 + 21906737-21907993
Length = 418
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 459 EARDRRQRHREEDPVLAPRQARFPDILPDQL 551
+ + R + + + V+ P A FPD+LP+++
Sbjct: 2 DVKTRSRNRKRKRTVVPPAAATFPDLLPEEI 32
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 366 REQDLPRVVQRGGPPPSHFHADGRRPE-----GGVQEARDRRQRHREEDPVLAP 512
R+ D+P+VV+ PP S + + E G A+ RR R R D L+P
Sbjct: 1571 RDADVPKVVKLEVPPESSKEPEQAKKEPASSVGDSPPAKRRRGRPRRSDASLSP 1624
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 435 RRPEGGVQEARDRRQRHREEDPVLAPRQARFP 530
R+P+G +E D+R+ +++DP AP++A P
Sbjct: 575 RKPKGRDEEGSDKRKPKKKKDP-NAPKRAMTP 605
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,372
Number of Sequences: 37544
Number of extensions: 321698
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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