Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C12
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   3.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   6.5  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    24   6.5  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 125 FVSTXESXVRPVRGMKSGIEYHQLWVVQSPPA 30
           +++  E     ++ +K GIE    W+ QSP A
Sbjct: 472 YLNLNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 160 KNLELVPDILAVFALYLKPTFQSINDLPA 246
           ++L+L   I+    LY+K  F ++NDL A
Sbjct: 148 EDLQLKNHIVGYQKLYIKLVFDNLNDLQA 176


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 187 LAVFALYLKPTFQSINDL 240
           L +  +++KPTFQS+ D+
Sbjct: 512 LLISPIFVKPTFQSLKDV 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,746
Number of Sequences: 5004
Number of extensions: 20952
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)