Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C12
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0147 + 25986259-25987701                                         31   0.28 
04_04_0340 + 24517562-24520318                                         30   0.65 
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   4.6  
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    26   8.1  
01_06_0373 - 28841462-28842850                                         26   8.1  

>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 128 CFVSTXESXVRPVRGMKSGIE---YHQLWVVQSPPADRAVRLSPR 3
           CF S     V+ ++ +  G+E   +  LWVV+SPP D A    PR
Sbjct: 278 CFGSLGAVSVKQLKEIARGLENSGHRFLWVVRSPPQDPAKFFLPR 322


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 98  RPVRGMKSGIEYHQLWV 48
           RP  GMK  +EYH++WV
Sbjct: 100 RPFEGMKWAMEYHEMWV 116


>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 341 CHLLIVINECCESRTAENIV 282
           CH +  +NECC SRT +N +
Sbjct: 189 CHKIDPVNECC-SRTCQNAI 207


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 47  QPTTDDTLFLTSFHERDGXLTPVWRRNNNEF 139
           +P  D  L L       G +TP W+R   EF
Sbjct: 829 RPNNDTQLGLPGAGAAAGDVTPAWKRGGREF 859


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 128 CFVSTXESXVRPVRGMKSGIE---YHQLWVVQSPPAD 27
           CF S        ++ + +G+E      LWVV+SPP+D
Sbjct: 259 CFGSIGLFSAEQIKEVAAGLEASGQRFLWVVRSPPSD 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,405
Number of Sequences: 37544
Number of extensions: 138721
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)