Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C12
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    26   9.7  

>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 197 NTANISGTSSRFFNPGIXXGIRCC 126
           N A+++  SS+  NPG+   I CC
Sbjct: 595 NGASVNSESSKKQNPGLISQISCC 618


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
           protein F25D1.5 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 91  TGRTXDSXVETKQQRIPXIIPGLKNLELVPDI 186
           TGR  D   ETKQQ +   +P  K   +V D+
Sbjct: 36  TGRNEDRLEETKQQILKAGVPAEKINAVVADV 67


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 70  IPDFIPRTGRTXDSX----VETKQQRIPXIIPGLKNLELVPDILAVFALYLKPTFQ 225
           +PD IP+T  T        + +   +IP IIP +K  +++P  L+       PT +
Sbjct: 230 VPDTIPKTLPTTKIPDIVPITSPTVKIPQIIPTIKIPDIIPKNLSTLGPIKLPTIK 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,192,331
Number of Sequences: 27780
Number of extensions: 119135
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)