Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C11
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   1.3  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   1.7  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.0  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   5.3  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   5.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.2  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 93  VVAHLVPEKRADISA-DLILSGSKKNIAH-GALFLKDNTIKSEYGASKDNFNHLMTTVKK 266
           V  H++P K+AD S  DL+ S  +KN  +  +L+L  N     Y   +     +   + K
Sbjct: 96  VHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGN---ERYAGDERPPTSMRQAIPK 152

Query: 267 DVEGLNDRIKDLGEKSSQ 320
           D E    R  +  EK +Q
Sbjct: 153 D-EDRKPRTLEEMEKEAQ 169


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 300 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 395
           L E S+ D ENL K  +P F  ++  F+   D
Sbjct: 52  LSENSNSDSENLAKTLSPIFDNLESVFKKGTD 83


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 FENLLKRATPYFKRIDDDFRAEWDK 398
           F  + K+  P+ KRI D+  +EW +
Sbjct: 291 FYTISKKPEPFIKRIADNLVSEWSR 315


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 123 ADISADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDL 302
           AD+S  ++   SK+N  H AL      + S     KD+  + ++   + ++ L D  +D 
Sbjct: 466 ADLSEQIVELESKRNDLHSALLEMGGNLTSLL-TKKDSIANKISDQSEHLKVLEDVQRDK 524

Query: 303 GEKSSQDFENLLKRAT 350
                ++   LLK  T
Sbjct: 525 VSAFGKNMPQLLKLIT 540


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 414 SVDKVFKEFSHTLNEVIHYLAKIIDEVLRGT 506
           SVDKV  + +  L E ++     + E+L+GT
Sbjct: 632 SVDKVLDQTAEALEEFVNTAPPKVQELLKGT 662


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 237 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDF 380
           F  L+ T++ D+EGLN  +    + S +  +  ++R     + +D+ F
Sbjct: 133 FQSLLKTLETDIEGLN-LVDHTHDPSDESIKQTVQRLRSSIEGLDEAF 179


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 100 ATTVNLQPDSSVVNSKYW 47
           AT +N   D SVV S YW
Sbjct: 153 ATKINALEDHSVVGSPYW 170


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = -2

Query: 374  IVNTFEVWCRTFQKILEVLA*FLAEIFDAVIQTFNVFFNSSHQMIEIVLRGTVFRFNGII 195
            ++  +++  ++F  ++ V   F++ +  +   +FN  +++ HQM+ +VL      F  +I
Sbjct: 3711 LIRRYKLSIKSFLSVVVVFQHFIS-LKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKSLI 3769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,098
Number of Sequences: 5004
Number of extensions: 43997
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)