Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C11
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0117 - 6779121-6779582 36 0.020
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 31 0.57
02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161 31 0.57
07_01_0613 - 4535892-4536331,4536462-4536543,4537493-4537576,453... 29 3.1
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 3.1
10_08_0431 + 17871432-17871593,17871684-17871714,17872898-178730... 28 4.0
05_03_0323 - 12424243-12424776 28 5.3
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 5.3
10_08_0881 - 21268996-21269103,21269389-21269496,21269827-212699... 27 9.3
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 27 9.3
05_03_0102 + 8414109-8414505,8416172-8416227 27 9.3
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 27 9.3
02_02_0530 - 11222463-11222765,11223075-11223176,11223298-112236... 27 9.3
>05_02_0117 - 6779121-6779582
Length = 153
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 207 KSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 386
+ Y S +++ L T V+GL++ + KS NLLK+A F+ R
Sbjct: 49 REAYYESPEDYPLLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRK 108
Query: 387 EWDKFYKEISVD 422
E +K Y E+ +D
Sbjct: 109 EVEKGYYEVGMD 120
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +3
Query: 231 DNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKE 410
D + + TT+K+ VE ++ ++D EK ++ + A P E+++ ++
Sbjct: 325 DGYVNARTTLKQFVEQYDNALRDKVEKENKSDCKSFQEAIPCITHY------EFERQFQV 378
Query: 411 ISVDKVFKEFSHTLNEVIHYLAKI 482
+K FKEF L I+Y A +
Sbjct: 379 AYTNKKFKEFQDELRGKIYYYATL 402
>02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161
Length = 595
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +3
Query: 132 SADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEK 311
S L+L + +A + L D+ + +YG S ++D++GLN I + E
Sbjct: 89 SLQLVLFSRQWGLAESLVALADHQLMLDYGLSVALDAIWFLRTEQDLQGLNHLIGKIVES 148
Query: 312 SSQDFENLLKRAT 350
++DF + R +
Sbjct: 149 GAKDFARAILRTS 161
>07_01_0613 -
4535892-4536331,4536462-4536543,4537493-4537576,
4537669-4537845,4538192-4538351,4539357-4539685
Length = 423
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 369 DDDFRAEWDKFYKEISVDKVFKEFSHTLNEVIHYLAK 479
DD+FR +WD ++ K+ +EF +IH++ K
Sbjct: 189 DDEFRLKWDPM---LAYFKILEEFPQNGTMIIHWIKK 222
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 255 TVKKDVEGLNDRIKDLGEKSSQDFENLLKRAT 350
T+++ E +ND K+LGE SS++ ++ L A+
Sbjct: 18 TLEEQQEKINDLRKELGEHSSEEIQDFLSDAS 49
>10_08_0431 +
17871432-17871593,17871684-17871714,17872898-17873005,
17873251-17873353,17874069-17874115,17874116-17874291,
17874736-17874822
Length = 237
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 111 PEKRADISADLILSGSKKNIAHGALFL-KDNTIKSEYGASKDNFNHLMTTVKKDVEGLND 287
P+ A I+ GSKKN H L +DN K +Y SKD + + + L D
Sbjct: 146 PKTPAGIARCFTYGGSKKNTLHDPKILPRDNLSKEKY-MSKDEKQTSINHFHEKLFKLKD 204
Query: 288 RIK-DLGEKSSQ 320
+K + G+K ++
Sbjct: 205 MMKTEAGKKRAE 216
>05_03_0323 - 12424243-12424776
Length = 177
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 213 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 329
+Y A +D M + +EG+ D + EK+ QDFE
Sbjct: 24 QYKALRDVLRREMNSRMDTLEGITDELSQKFEKTIQDFE 62
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 150 SGSKKNIAHGALFLKDNTIKSEYGASKDN 236
SG K N+ HG++FL +T ++ S DN
Sbjct: 996 SGKKMNMVHGSIFLDISTGRTSSDVSIDN 1024
>10_08_0881 -
21268996-21269103,21269389-21269496,21269827-21269916,
21270010-21270246,21270335-21270901
Length = 369
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 219 GASKDNFNHLMTTVKKDVEGLNDRIK 296
G + L TT+K++VEGL + +K
Sbjct: 300 GVTSSTLEELSTTIKQEVEGLQEAMK 325
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 237 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDD 374
F LM V +++ +IKD+ + + FEN L + FK+ D
Sbjct: 102 FVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAAD 147
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 213 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 329
+Y A +D M + +EG D + EK+ QDFE
Sbjct: 24 QYNALRDVLRREMNSRMDTLEGRTDELSQKFEKTIQDFE 62
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 448 VCENSLNTLSTEISL*NLSHSALKSSSIRLKYGVARFRRFSKSWLD 311
VC + N L++E L H KSS + K +A F RF K W D
Sbjct: 499 VCLSESNCLNSEDIL--AFHIIFKSSLCQKKSLIAIFYRFVKMWQD 542
>02_02_0530 -
11222463-11222765,11223075-11223176,11223298-11223622,
11224072-11224106
Length = 254
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +3
Query: 285 DRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEI 413
D ++D+ ++ QD N +K +DD R W+K ++
Sbjct: 145 DMVRDINDEHDQDIVNAVKCVRSTRGHLDDLRRHGWEKLESDV 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,596
Number of Sequences: 37544
Number of extensions: 248235
Number of successful extensions: 612
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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