Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C11
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    33   0.096
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly...    32   0.22 
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly...    32   0.29 
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly...    32   0.29 
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    30   0.89 
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    29   1.6  
U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    28   3.6  
U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    27   6.3  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   8.3  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    27   8.3  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   8.3  
AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like ...    27   8.3  

>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +3

Query: 270 VEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHT 449
           VE L  +     ++S++  E + K A  Y KRI++D R    +  KE  VD   ++FS T
Sbjct: 238 VENLKAQFLKERKESTEKIELIQKEAEDYRKRIEEDIRNRQQRHKKE--VDAHQEKFSAT 295

Query: 450 LNE---VIHYLAKIIDEVLRGTIPIVDQI 527
           +N    VI  L + + +       + DQ+
Sbjct: 296 VNHQNAVIEELTQTVKQKQSEIAELKDQL 324


>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform c
           protein.
          Length = 1198

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 216 YGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 395
           YG S  +F +       D   L    K+  +  +Q  E   K+   ++  +  + RAEWD
Sbjct: 25  YGHSSKSFRNRRDNDLHD--WLTAEQKESLKDIAQGTEEFKKKVAVFYNELPAEKRAEWD 82

Query: 396 KFYK 407
           KFYK
Sbjct: 83  KFYK 86


>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
           polyprotein allergen related,post-translationnally
           cleaved, the diverse 14.5 kDa cleavageproducts bind
           lipids and retinol (164.6 kD) protein.
          Length = 1440

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 SQDFENLLKRATPYFKRIDDDFRAEWDKFYK 407
           +Q  E   K+   ++  +  + RAEWDKFYK
Sbjct: 50  AQGTEEFKKKVAVFYNELPAEKRAEWDKFYK 80


>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform a
           protein.
          Length = 1440

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 SQDFENLLKRATPYFKRIDDDFRAEWDKFYK 407
           +Q  E   K+   ++  +  + RAEWDKFYK
Sbjct: 50  AQGTEEFKKKVAVFYNELPAEKRAEWDKFYK 80


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 43  TSNISNSLQRNQAVNSRLLHTWYQKNVLTSVRISFYLAARRT*LMALYSLKIIPLNLNTV 222
           TS   N L   QAV   L + W+ K +  + + S  +  +        S K + +     
Sbjct: 294 TSGFLNGLGNVQAVKKDLNNEWFLKKIARNDKSSLIVLKQYLRFFETVSSKSVEMETVFT 353

Query: 223 PLRTIS 240
           PLRTIS
Sbjct: 354 PLRTIS 359


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = +3

Query: 270 VEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHT 449
           V  L DRIK +  K    F+NL K      K    +F+   DK   E+ V    K+  + 
Sbjct: 455 VNELRDRIKAIDYKEIFIFQNLSKAIEEKLK--SQEFK---DKISSELEVHNCLKKLKNN 509

Query: 450 LNEVIHYLAKIIDEVLRGTIPIVDQI 527
              VI  +  +I   +R  +  V QI
Sbjct: 510 SEAVIR-MVPLIQAFMRADLQNVQQI 534


>U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical
           protein C30G4.7 protein.
          Length = 114

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 171 AHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQ-DFEN-LLKR 344
           AH  L + DN I+      K    HLM  V+++V+GL  +I DL     + + EN +LKR
Sbjct: 45  AHNVLNI-DNKIEQAMDLVK---THLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKR 100

Query: 345 ATP 353
             P
Sbjct: 101 TIP 103


>Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical
           protein F55A11.2 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 KDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENL 335
           +   +HL + VK D+ GLN +I  L E S +   N+
Sbjct: 181 RSQIDHLSSIVKSDITGLNKQIGQLQEFSKRRAGNM 216


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 387 EWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVL 497
           E+DKFY E   +    E    LNE+I    +I+D++L
Sbjct: 765 EFDKFYIECDGNNEGVECLRLLNEIISDFDQILDQIL 801


>U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical
           protein C24A3.1 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 162 KNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLK 341
           K    G   L+D  I+ +  A +D  N+L      D E LN+  + L +K +     + K
Sbjct: 234 KTAGDGIQRLQD-MIRQQDLARQDIMNNLSKKGDVDKEKLNEETRRLNDKINLITSEVTK 292

Query: 342 RATPYFKRIDDDFRA 386
           + T   ++  DDF +
Sbjct: 293 KMTENQQKAKDDFNS 307


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
 Frame = +3

Query: 132 SADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEK 311
           S DL+L+   +N   G L++KD     EY   KD  +++++   K ++ L       GEK
Sbjct: 41  SCDLVLADFLEN--SGNLYMKDKKRLKEY---KDECHNVLSCYNK-IKCLGTN----GEK 90

Query: 312 SSQDFENLLK--RATPY----FKRIDDDFRA-------EWDKFYKEISVDKVFKEFSHTL 452
                +N+ K  RAT Y    F +  D   A       +WD    +++ +KV K+F   +
Sbjct: 91  IPA-IKNIGKHCRATDYVHDDFAKCSDKLNAKKSTCFDDWDPIPNKVTTEKVPKKFDQLM 149

Query: 453 NE 458
           +E
Sbjct: 150 SE 151


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 MTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATP 353
           +TT++ + E L   ++++G+K+S++   +L   TP
Sbjct: 255 VTTIQNNTENLEKTVRNVGQKNSKNDSLVLSLQTP 289


>Z74032-1|CAA98465.3|  342|Caenorhabditis elegans Hypothetical
           protein F35B12.2 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 321 DFENLLKRATPYFKRIDDDFRAEWDKFYKEISVDKVFKEFSHTLNEVIHYL 473
           D + +LKR    + +IDD+ R E+ + +K        K +       IHY+
Sbjct: 229 DEQAMLKRVDHVWTQIDDETRTEYGETFKNYFAKMWNKTYISMSTTKIHYV 279


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 402  YKEISVDKVFKEFSHTLNEVIHYLAKIIDEV 494
            Y+E  +DK+ K++SH L    +YL   +D +
Sbjct: 1132 YQEEDLDKIRKQWSHALKSRQYYLQHQLDSL 1162


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform b protein.
          Length = 1610

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 402  YKEISVDKVFKEFSHTLNEVIHYLAKIIDEV 494
            Y+E  +DK+ K++SH L    +YL   +D +
Sbjct: 1132 YQEEDLDKIRKQWSHALKSRQYYLQHQLDSL 1162


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 402  YKEISVDKVFKEFSHTLNEVIHYLAKIIDEV 494
            Y+E  +DK+ K++SH L    +YL   +D +
Sbjct: 1132 YQEEDLDKIRKQWSHALKSRQYYLQHQLDSL 1162


>AB023496-1|BAA97564.1|  793|Caenorhabditis elegans kinesin like
           protein KLP-4 protein.
          Length = 793

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 402 YKEISVDKVFKEFSHTLNEVIHYLAKIIDEV 494
           Y+E  +DK+ K++SH L    +YL   +D +
Sbjct: 552 YQEEDLDKIRKQWSHALKSRQYYLQHQLDSL 582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,862
Number of Sequences: 27780
Number of extensions: 242861
Number of successful extensions: 875
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)