Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C10
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 36 0.031
03_04_0029 - 16610182-16611753 31 0.50
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 2.0
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 29 2.7
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 29 2.7
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313... 28 4.6
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 28 4.6
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 28 4.6
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 28 4.6
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 6.1
02_05_1008 - 33461225-33462334 28 6.1
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 27 8.1
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 27 8.1
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 35.5 bits (78), Expect = 0.031
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Frame = +2
Query: 122 QYQFFPLSSGSVQFKVRAANDAHVALTMGPQESEPMYEIMIGGWGNSKSVIRRNKTKPDK 301
+++F G + F+ A ND V L Q Y + + ++ ++ K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 302 VEIETPSILN--------AGEFRGFWVRWDSGIIS--AGREGESIPFISWSDPEP-FPVN 448
+E++ ++++ + F+ +W+ G+IS GR + W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 449 FVGVCTGW 472
+VG+ + W
Sbjct: 140 YVGL-SSW 146
>03_04_0029 - 16610182-16611753
Length = 523
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -1
Query: 573 NSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAP---QPVHTPTKL----TGKGSGSDQD 415
+++ PAAA P++ S + + PSS ++ +P P HT K G G GSD+D
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPAHRAPGHTGGKKGGGGKGGGGGSDRD 129
Query: 414 MNGIDSPSRPADI 376
M + P +
Sbjct: 130 MRWAEQLLNPCAV 142
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -1
Query: 576 SNSSEPAAAGPNL---YSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNG 406
S+SS AAA P L V+ +AP S P PQPV T TK G G+ S NG
Sbjct: 605 SSSSSAAAAAPALPPPEHAEPAVTVAAPISQTPPPPPPQPV-TTTK-NGNGTSSTNGANG 662
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = -1
Query: 576 SNSSEPAAAGPNLYSNLSGVSNSAPSS--IFQEPVAPQPVHTPTKLTGKG---SGSDQDM 412
S+S P G N + ++SAP S + ++P + + +P G S
Sbjct: 38 SSSPSPQTEGEGSNPNPNAAASSAPPSPPLAEDPAGRRTLASPYPSPGLPPLPSRRSSSP 97
Query: 411 NGIDSPS--RPADIMPLSQRTQKPRNSP 334
I SPS RPA MP + + PR P
Sbjct: 98 FAISSPSPLRPAAAMPPADLPRPPRRGP 125
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 573 NSSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPT 451
N E A G + L+ S+S+ S +P+A Q +HTPT
Sbjct: 322 NKKESKANGEKGSTGLTFPSSSSVKSASSDPMADQNLHTPT 362
>05_01_0397 -
3129679-3130144,3130655-3131104,3132215-3132273,
3133136-3133305,3134655-3134771,3134980-3135166
Length = 482
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 570 SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTP 454
+SEPA A L+ GV S+P + E + + +HTP
Sbjct: 442 TSEPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTP 480
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 341 FRGFWVRWDSGIISAGREGESIPFISWSDPEP 436
+R WV W +I AG G F+ PEP
Sbjct: 200 WRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 372 ALYLLVARVNQSHSYPGRIPNPSPLTSLAYVPAGALPV 485
A+YL+++++++ YP + +P P L + +PV
Sbjct: 205 AIYLILSKLSEDVHYPPNLSSPFPYAGLGFPSYPGVPV 242
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 528 LSGVSNSAPSSIFQEPVAPQP--VHTPTKLTGKGSGSD 421
LS V PS +EP +P P PT ++G G G D
Sbjct: 34 LSAVIVPDPSPELREPTSPSPSLAPAPTPVSGAGGGDD 71
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 339 NSVVSGFVGIVALYLLVARVNQSHSYPGRIPN 434
N+ V+GF+G V LLVARV Q YP +P+
Sbjct: 236 NAKVTGFLGGVNWALLVARVCQ--LYPNAVPS 265
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 570 SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGS 424
SS P++ + S+L GV + P+S+ P AP P+ ++ GSG+
Sbjct: 56 SSAPSSTSSSGSSSLGGVP-TPPNSVGSAPPAPPPLSELERVRRIGSGA 103
>11_04_0195 -
14725553-14725571,14725988-14726079,14727214-14727335,
14727588-14727597,14727798-14727896,14728046-14728612
Length = 302
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = -1
Query: 570 SSEPAAAGPNLYSNLSGVSNSAPSSIFQEPVAPQPVHTPTKLTGKGSGSDQDMNGIDSPS 391
SS P A + + + VS + S EP P+P P+ L S S D G+ PS
Sbjct: 80 SSAPLPALRRVLAGAASVSCFSHSDQPPEP-PPEPTSAPSPLPEPNSTSASDGAGVVCPS 138
Query: 390 RPADIMPLS 364
P+S
Sbjct: 139 ARPTASPIS 147
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 333 PVNSVVSG-FVGIVALYLLVARVNQSHSYPGRIPNPS 440
PV +SG + + L L+ +R+N++ S+P R NP+
Sbjct: 738 PVVGKISGPTIACIPLRLVFSRINEALSFPVRSENPT 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,371
Number of Sequences: 37544
Number of extensions: 414405
Number of successful extensions: 1361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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