Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C09
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    28   3.7  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   3.7  
Z68217-2|CAA92470.2|  134|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 289  LCNTYSYFLRKNTSIVFTLCLYALFRVMRG 378
            L NT+ YFL KN + VF +  Y  +    G
Sbjct: 991  LANTFLYFLYKNANAVFIIFYYQFYNGASG 1020


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 289  LCNTYSYFLRKNTSIVFTLCLYALFRVMRG 378
            L NT+ YFL KN + VF +  Y  +    G
Sbjct: 991  LANTFLYFLYKNANAVFIIFYYQFYNGASG 1020


>Z68217-2|CAA92470.2|  134|Caenorhabditis elegans Hypothetical
           protein F58G6.3 protein.
          Length = 134

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 216 IKYSQNLIQKNTN-----HFNQSL*F*EHFMQYILLFFTEKYIYCLYIMFI 353
           IKY++ LIQK  +      +   L    HF Q  L F    + YCL ++F+
Sbjct: 58  IKYNRRLIQKRQSPSKKESYISRLLSTMHFFQTFLFFVQLGFSYCLMLIFM 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,980
Number of Sequences: 27780
Number of extensions: 187107
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)