Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C07
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   149   2e-37
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    29   0.33 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.0  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   7.2  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  149 bits (362), Expect = 2e-37
 Identities = 72/159 (45%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
 Frame = -2

Query: 537 FFHRSLSRNIEIGSI*PPLRITP--FNPFHIPLLNTIILISSGVTVT*THHALIENNYSQ 364
           FFH SLS   E+G++ PP+ I     +P  +PLLNT+IL++SG ++T  H++LI  N   
Sbjct: 111 FFHSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNREN 170

Query: 363 ATQSLFITITLGIYFTILQAYEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTLFLLIC 184
           A + L++TI L   F   QAYEY  APFTI+DS+YG++F+ ATG HG+H+I+GT+ LL+ 
Sbjct: 171 ALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVA 230

Query: 183 FLRXXXXXXXXXXXXXFEAAA*Y*HFVDVV*LFLYISIY 67
                           FE    Y HF DVV LFLY++IY
Sbjct: 231 TYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 262 LWINFFYGYWISWPSCNYW 206
           LW+N  +  W+SW SCN++
Sbjct: 335 LWLNEGFATWMSWFSCNHF 353


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -2

Query: 333 LGIYFTILQAYEYLE----APFTIADSIYGSTFFMATGFHGLHVI------IGTLFLLIC 184
           L IYF+ L +YE +E       T+ DS+YG   +     H L  I         L LLIC
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCIPLNQDSFKQLKLLIC 190

Query: 183 FL 178
            L
Sbjct: 191 IL 192


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 75  KYKEIIILHLQSVNIMQ---LLQIQSDDYL--RNDLSYDVKSKLIKIMFQ*LHEGHE 230
           KY+EII+ H Q    MQ   LL+I S D L  +  LSY   +++  +++   ++ +E
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNE 294


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/53 (26%), Positives = 32/53 (60%)
 Frame = +3

Query: 78  YKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSKLIKIMFQ*LHEGHEIQ 236
           Y  I ILH QS++ ++ +++ SD++L   + +D +  L  I F  + + ++++
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNFLL--IQHDSQLSLWDITFGTIQDVYDLK 354


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 384 IENNYSQATQSLFITITLGIYFTILQAYEYLEAPFTIADSI 262
           +  +YS  +  L++ +  G+Y + L++Y+    P   A  +
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEV 48


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 21  SRVXXXXXXIINYLISK*KYKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSK 188
           +R+       + Y  SK  Y+E+I  ++ +VN+ +      ++Y  N  S+D++ +
Sbjct: 318 ARIYNTLLKYMRYQYSKRGYQEVITPNMYNVNLWK-TSGHWNNYSENMFSFDIEKE 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,583
Number of Sequences: 5004
Number of extensions: 25055
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)