Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C06
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    31   0.081
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   4.0  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    24   7.0  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 30.7 bits (66), Expect = 0.081
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 82  DISWGQISRFKN*HIHLFGRPVLLLACLLWQYPVL 186
           DIS+G+I  F++ H+ L   P+L L  L + +PV+
Sbjct: 178 DISFGKIKDFRSKHMSLVTIPILYLDFLQFSFPVV 212


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 127 HLFGRPVLLLACLLWQYPVLIAVICRCTSV*VKNQ*QWTSHSLSTDLK 270
           HLFGR  LL +   WQ      +  +   V +K    W   ++S + K
Sbjct: 263 HLFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNISLNQK 310


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 197 ITAISTGYCHSKQASNSTGLPNKCIC*FLNLLICPQDISPCTL 69
           +T  +TG+C     +N   LP K    F+NL  C ++  PC L
Sbjct: 57  MTKSTTGWCEGYIQANLLVLPAKYRDDFVNL--CVRNPVPCPL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,709
Number of Sequences: 5004
Number of extensions: 27017
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)