Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C06
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1245 + 35223504-35224778                                         31   0.41 
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594...    27   3.8  
11_06_0034 - 19448316-19449767                                         27   6.6  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   6.6  
09_04_0135 - 14954060-14954156,14955027-14956024                       26   8.7  
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676...    26   8.7  

>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 240 PLLLIFNLDARASANHSNQHRILPQQT 160
           PLLL F+  A A+AN S+ HR+ P  T
Sbjct: 102 PLLLTFHELAAATANFSSSHRLAPNST 128


>04_04_0014 +
           22158441-22158669,22158782-22158878,22159264-22159461,
           22159907-22160141,22160383-22160710,22160798-22161068,
           22161169-22161424,22161508-22161964,22162096-22162286
          Length = 753

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 85  ISWGQISRFKN*HIHLFGRPVLLLACLLWQYPVLI 189
           +++  IS F + HIH+    +  L   LW +PVL+
Sbjct: 93  LAYVYISAFPSDHIHVEKNKLKTLCFRLWTFPVLV 127


>11_06_0034 - 19448316-19449767
          Length = 483

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 MDVTLPVDRFKDHNYPTY 290
           MD +LP+ ++KDHN   Y
Sbjct: 237 MDFSLPLHKYKDHNLVVY 254


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
 Frame = +2

Query: 131 CLAGRCCCW--PVCC 169
           C+A  CCCW   +CC
Sbjct: 51  CIAALCCCWLCELCC 65


>09_04_0135 - 14954060-14954156,14955027-14956024
          Length = 364

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 150 QHRPAKQMYMLVFKSAYLPPGYISVYSRR 64
           QH    +MY  +FK+ Y  P ++S  +RR
Sbjct: 224 QHENYAKMYQKIFKAEYQVPPWVSGDARR 252


>06_01_0882 +
           6759378-6759707,6759837-6760488,6760609-6760673,
           6761363-6761440,6761523-6761633,6761739-6761783,
           6762200-6762373,6762841-6763797
          Length = 803

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 62  FRLEYTEIYPGGR*ADLKTNIYICLAGRCCCWPVCCGSI 178
           FR    +IY G R   +K  I  C A     W V CG +
Sbjct: 399 FRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGV 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,755
Number of Sequences: 37544
Number of extensions: 172107
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)