Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C06
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    29   0.85 
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    27   6.0  
Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    26   7.9  
AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative RNA-...    26   7.9  
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     26   7.9  

>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 LKTNIYICLAGRCCCWPVCCGSILC*LL*FADA-RASRLKISNNGR 244
           L+  I +CLA  CCC   CC  ++C    + DA  A   K  + GR
Sbjct: 190 LRKKILMCLAV-CCCPLTCCLPLICICCNYVDACGACGKKYGHRGR 234


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
            protein Y48G9A.1 protein.
          Length = 1725

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 98   CPQDISPCTLDEIYNSSYLNY 36
            C Q +SP T+DEIY  + L Y
Sbjct: 1471 CGQKMSPTTIDEIYRVTELIY 1491


>Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical
           protein C17D12.2 protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 234 LLIFNLDARASANHSNQHRILPQQTGQQQHRPAKQMYMLVFKSA 103
           L +  L A A+A  +  + +L QQT QQQ +  +    L  +SA
Sbjct: 271 LHVLQLQAAAAAAQAAANPVLSQQTQQQQQQQQQLAAQLQLQSA 314


>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -2

Query: 342 EIFSL*SKPKYAINYTTNMS--DNCGL*ICRQGV*RPLLLIFNLDARASANHSNQHRILP 169
           E+ ++ +K   AI+  T +S  D     +    V   L L F L A    +     RI  
Sbjct: 305 ELRTIMNKVSSAISSVTFLSSGDGASHRLSSSSVLLVLTLHFYLCASLRRDTRLARRIRR 364

Query: 168 QQTGQQQHRPAKQMYMLVFKS 106
           +++GQQ+H   ++++ML  +S
Sbjct: 365 RESGQQRHLSEQKVHMLALRS 385


>AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative
           RNA-binding protein protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 234 LLIFNLDARASANHSNQHRILPQQTGQQQHRPAKQMYMLVFKSA 103
           L +  L A A+A  +  + +L QQT QQQ +  +    L  +SA
Sbjct: 271 LHVLQLQAAAAAAQAAANPVLSQQTQQQQQQQQQLAAQLQLQSA 314


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -2

Query: 342 EIFSL*SKPKYAINYTTNMS--DNCGL*ICRQGV*RPLLLIFNLDARASANHSNQHRILP 169
           E+ ++ +K   AI+  T +S  D     +    V   L L F L A    +     RI  
Sbjct: 305 ELRTIMNKVSSAISSVTFLSSGDGASHRLSSSSVLLVLTLHFYLCASLRRDTRLARRIRR 364

Query: 168 QQTGQQQHRPAKQMYMLVFKS 106
           +++GQQ+H   ++++ML  +S
Sbjct: 365 RESGQQRHLSEQKVHMLALRS 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,109,299
Number of Sequences: 27780
Number of extensions: 160124
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)