Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C05
         (125 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0692 + 30973171-30973908                                         26   3.7  
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664...    26   4.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    25   6.5  

>02_05_0692 + 30973171-30973908
          Length = 245

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 3  GGGV*TSGSPGCGIRHE 53
          GGG   SGS GCG+RH+
Sbjct: 27 GGGA--SGSRGCGLRHQ 41


>02_02_0509 -
          11064209-11064470,11065945-11066132,11066249-11066493,
          11066816-11066987,11067090-11067496,11068443-11068587
          Length = 472

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 55 PSCRIPQPGDPLV*TPPP 2
          PSC+ P  G PL+ TPPP
Sbjct: 7  PSCQAPPTGLPLL-TPPP 23


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 46  RIPQPGDPLV*TPPP 2
           RIP P  PL+ TPPP
Sbjct: 87  RIPPPPPPLLPTPPP 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.124    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,680
Number of Sequences: 37544
Number of extensions: 18146
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)