Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C04
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 175 3e-45
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 175 3e-45
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.001
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 29 0.33
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.3
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.0
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 5.3
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 25 7.0
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 25 7.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 7.0
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 7.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.3
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 9.3
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 175 bits (427), Expect = 3e-45
Identities = 89/127 (70%), Positives = 103/127 (81%)
Frame = +1
Query: 151 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 330
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 331 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 510
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 511 QAVDVSP 531
QAVDVSP
Sbjct: 136 QAVDVSP 142
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 175 bits (427), Expect = 3e-45
Identities = 89/127 (70%), Positives = 103/127 (81%)
Frame = +1
Query: 151 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 330
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 331 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 510
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 511 QAVDVSP 531
QAVDVSP
Sbjct: 136 QAVDVSP 142
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 307 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 465
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 210 LQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHNHAARSAIFGPVLSAI 61
LQ+H++YL + P P F + SR W +V+ + AI G + S++
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW---MVYWELSSLAILGKLDSSV 77
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 136 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 273
ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 109 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 249
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Frame = +1
Query: 70 ENWTENRRPGGMVVDNMPLPQPADIPEIKLFGRWS 174
E W R ++ + P P+ PE+ F W+
Sbjct: 215 EGWPSELRLTSSIIQTLGTPNPSMWPELSTFPDWN 249
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 111 HNHAARSAIFGPVLSA-IFHT 52
HN R IFGPVL+ FHT
Sbjct: 396 HNKIWREEIFGPVLAVKTFHT 416
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 388 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 531
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSP 204
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 7.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 265 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 405
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 246 IFCILLFYRNIILQRHVRYLN 184
I C+L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 394 EIIHLLTGENPLQVLVTAIINSGPREDSTR 483
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 83 SVQFSQPYFTLYSQFTNYNLALSKNP 6
S + S+ T +S F+N + LSKNP
Sbjct: 149 SFEVSKEELTSFSTFSNVIVVLSKNP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,059
Number of Sequences: 5004
Number of extensions: 52856
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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