Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C04
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   214   4e-56
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          208   2e-54
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325...    31   0.76 
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   7.1  
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323...    27   7.1  
07_01_0705 - 5313315-5315219,5315858-5315860                           27   9.4  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  214 bits (522), Expect = 4e-56
 Identities = 101/129 (78%), Positives = 114/129 (88%), Gaps = 1/129 (0%)
 Frame = +1

Query: 148 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 324
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69

Query: 325 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 504
           SLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70  SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129

Query: 505 RRQAVDVSP 531
           RRQAVD+SP
Sbjct: 130 RRQAVDISP 138


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  208 bits (508), Expect = 2e-54
 Identities = 98/128 (76%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
 Frame = +1

Query: 151 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 327
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71

Query: 328 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 507
           LMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72  LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131

Query: 508 RQAVDVSP 531
           RQAVD+SP
Sbjct: 132 RQAVDISP 139


>06_02_0103 -
           11829343-11829699,11831560-11831826,11832239-11832559,
           11833783-11833844,11835413-11835446,11835539-11835619
          Length = 373

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +1

Query: 94  PGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 252
           PGG +V ++ L + +D P+ +L   W+     +SDM+L+  IS ++  + Y+P
Sbjct: 218 PGGRMVVSL-LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 307  VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 417
            +  L    ++HG  N ++++AV  +K   +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364


>07_03_0865 +
           22130880-22130921,22131938-22132170,22132268-22132385,
           22132474-22132656,22132859-22132960
          Length = 225

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 183 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 311
           R+S+G    GL FG+  V +  TT   Q  S +IP   VP  G
Sbjct: 19  RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60


>07_01_0705 - 5313315-5315219,5315858-5315860
          Length = 635

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 495 STTDPGGVFSWTRINNSS 442
           S T PGGV  WTR+ NS+
Sbjct: 96  SYTSPGGVEVWTRVCNST 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,990
Number of Sequences: 37544
Number of extensions: 347644
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)