Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C04
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   225   2e-59
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  225 bits (550), Expect = 2e-59
 Identities = 106/131 (80%), Positives = 116/131 (88%)
 Frame = +1

Query: 139 DIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 318
           + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVERL
Sbjct: 19  EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78

Query: 319 TNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAG 498
            NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGRAG
Sbjct: 79  ANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAG 138

Query: 499 TVRRQAVDVSP 531
           TVRRQAVDV+P
Sbjct: 139 TVRRQAVDVAP 149


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 152 SNFLGDGVVMTFKYRTCLCRIIF 220
           SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 291 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 169
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 291 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 169
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 112 PQPCRPVGDFRSSSLSHISHFIRNLRIIT 26
           P  C P G FRSSS S+ + F R  R  T
Sbjct: 274 PPRCGPAGSFRSSSSSNDNGFNRRSRRAT 302


>Z83106-2|CAB05494.1|  321|Caenorhabditis elegans Hypothetical
           protein F22B8.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 246 IFCILLF-YRNIILQRHVRYLNVITTPSPKKFDFGNISR-LW*WHVVHNHAARSAIFGPV 73
           +FCI+L  Y  II    + YL +        F   N+ R  +   V+        +F P+
Sbjct: 213 LFCIMLIQYTIIIYCATIMYLKMEEKLKLLSFAIRNLHRQFYKTLVIQIFTPTIFLFSPL 272

Query: 72  LSAIFHTLFAI 40
           +  IFH LF +
Sbjct: 273 IFIIFHPLFNV 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,883
Number of Sequences: 27780
Number of extensions: 303790
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)