Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C03
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 123 1e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 119 2e-27
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 2e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 3e-21
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.58
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.58
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.58
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.58
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 123 bits (296), Expect = 1e-28
Identities = 56/106 (52%), Positives = 70/106 (66%)
Frame = +1
Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 366
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 367 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKLPNTL 504
+A+ FK+L+KYRPE+ E K PNT+
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTV 137
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 486 EIAKHPTALE--TNTVTKLVEKKKAQLVVIA 572
E+ K P + NT+T+LVE ++AQLV+IA
Sbjct: 129 EVTKRPNTVRHGVNTITRLVETRRAQLVLIA 159
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 119 bits (286), Expect = 2e-27
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +1
Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 366
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 367 TAKGLFKILEKYRPET 414
+A+ FK+L+KYRPE+
Sbjct: 92 SARQAFKLLDKYRPES 107
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +3
Query: 480 ATEIAKHPTALE--TNTVTKLVEKKKAQLVVIA 572
+TE+ K P + NT+T+LVE ++AQLV+IA
Sbjct: 107 STEVTKRPNTVRHGVNTITRLVETRRAQLVLIA 139
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (285), Expect = 2e-27
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +1
Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 366
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 367 TAKGLFKILEKYRPET 414
+A+ FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +1
Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 360
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 242 LVGWMSWPIAKF--FVLFSNRGFTIF 171
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,681
Number of Sequences: 27780
Number of extensions: 213936
Number of successful extensions: 487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -