Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C01
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    53   1e-08
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    30   0.10 
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    25   2.9  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   2.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   2.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   3.9  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    24   6.8  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    24   6.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   6.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   6.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   9.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   9.0  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 53.2 bits (122), Expect = 1e-08
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +1

Query: 121 KRAVKMLSRVAPGVCTQAVAVVN-HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAA 297
           ++ +   SR+ P  C   V     H  +   ATLK I  RLKS+KNI+KIT+++K V+  
Sbjct: 3   RQTLTQASRMRP--CISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQT 60

Query: 298 KYTRAERDLKAARPYGEGAVQFYERA 375
           K TRA+R ++A+  Y   + + ++ A
Sbjct: 61  KLTRAQRAMEASNKYYRVSDEVFKEA 86


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 163  CTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 324
            C +AV  +     +N    KAI I  K VKNI   T ++++       RA + L
Sbjct: 1058 CDEAVERLGADDTKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 222 FKCGHIPVLLVVDHRHRLGAYTRCDTTQHFHGSFLVQW 109
           F    +P+   + H++  G  T     +  HG FLVQW
Sbjct: 8   FGARRLPMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQW 45


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 152 HRVYAPKRWRWSTTSRTGIWPHLKPSPFVSSL*RIF 259
           H+VY   R  W  T   G +P+LK +  V  L R+F
Sbjct: 281 HQVYP--RGNWVFTCLNGYYPYLKLTLLVGFLFRLF 314


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 241  KSVKNIQKITQSMKMVSAAKYTRAERDLK 327
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 221 LSVAIFLFCWWLTTATAWVHTP 156
           +S++I+ F +WLT   +W+  P
Sbjct: 115 VSLSIWRFLYWLTFVLSWIILP 136


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 264 LLNILYRLETNGDGFKCGHIPVLLVVDHRHRLG 166
           L N+    E +  G   GHIP L++ +   RLG
Sbjct: 176 LSNLQTAKEISNHGRSTGHIPELIINNFSTRLG 208


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = +1

Query: 217 LKAISIRLKSVKNIQKITQSMK 282
           L+AIS+RL++++  +++ QSM+
Sbjct: 86  LQAISLRLQTMRTSEQMMQSMR 107


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 191  WLTTATAWVHTPGATRLNIFTAL-F*YSGNCKLNIYYFK 78
            W+T   AW++   +   +IF +L F   G  +  I+ F+
Sbjct: 2074 WITNVAAWIYAIASASGSIFFSLNFGEEGAVQTRIWVFR 2112


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 214 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 354
           T + IS RL   +NI+++ Q  + + +A +  A+R  K  +P  +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 149  SHRVYAPKRWRWST 190
            +H+VY PK W  ST
Sbjct: 2547 AHKVYHPKEWSLST 2560


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 228 DGFKCGHIPVLLVVDHRHRLGAYTRCDTTQHFH 130
           D F    + V    +  H +  +++CD TQ FH
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFH 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,393
Number of Sequences: 5004
Number of extensions: 30788
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)